Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq60 159 4e-34 >seq60 Length=1285956 Score = 159 bits (176), Expect = 4e-34 Identities = 461/704 (65%), Gaps = 14/704 (2%) Strand=Plus/Plus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||||| | |||||| ||| | || || || ||| Sbjct 693643 AGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTC 693702 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || ||||||||||| ||||| ||||| | || | |||||||| | ||||| ||| Sbjct 693703 ATGAAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTT 693762 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| ||||| | |||| | | | ||| | |||||||| || | || Sbjct 693763 CCATGGTTCTTGCGCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAG 693822 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | || || || ||||| || ||||| || | || | |||||||| || Sbjct 693823 ATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTG 693882 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | |||| | ||| || || ||||||||||| || |||||||| || | ||||| Sbjct 693883 AACACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAA 693942 Query 63320 CCACTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 ||| | ||||| ||| | |||| ||||| || || || ||||| || ||||| | Sbjct 693943 CCAGTAGCACGGATACGGTGGACATTG--AGACCAATGCCGCCAGCCATCTTGGAGATCA 694000 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 ||||| || | || |||||||| ||||| || || |||||| | || | || | Sbjct 694001 TGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCA 694060 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | || || || | ||| | || || || || || | ||| || || || | Sbjct 694061 GGAAGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCAT 694120 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCT-GAGTCTATATC 63552 | || || | || || | | ||||| |||||||| ||| || | | || Sbjct 694121 GGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTC 694180 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63612 || |||| || || || |||||||| | ||||||||| || | || || ||||| Sbjct 694181 CC-CAGATG----CCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTT 694235 Query 63613 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63672 | || | || | || ||| || |||| || || || ||||| || | ||| Sbjct 694236 GCCGTCAAGCTTGAGCAGGTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTT 694295 Query 63673 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 63716 ||||| || ||||| | ||| |||||| || | ||||||| Sbjct 694296 GAAGTCCCGGTCGTAGACAATGGCCGAGTCCAGCTCCTCCTTAT 694339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630946586800