Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq101 107 2e-18
seq79 89.7 4e-13
seq94 82.4 7e-11
>seq101
Length=737149
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| || ||||||| |||| |||||||||||
Sbjct 589762 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 589821
Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| |||||||| | || | ||| || ||| || || || || ||||| || || ||
Sbjct 589822 GATACTATCGA-TAACGTCAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCA 589880
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||| ||||| || | || |||| ||||| || || |||||
Sbjct 589881 GCAGCGCCTAATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGACTACAA 589940
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||| ||||| || || || |||||
Sbjct 589941 CATCCAGAAAGAGTCCACCCTGCACTTGGTGCT 589973
Score = 82.4 bits (90), Expect = 7e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
||||| || | ||||| |||| |||||||| || || |||||||| | |||
Sbjct 589558 ACCGGAAAGACTATCACCCTCGAGGTGGAGTCTTCGGATACTATCGACAACGTCAAGTCG 589617
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|| ||| ||||| || || || || || ||||||||||| | || || || |||||
Sbjct 589618 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTCGCTGGCAAG 589677
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
|| | || || | || ||| | ||| ||||||||||| || || ||||| || |||
Sbjct 589678 CAGCTTGAGGACGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCAT 589737
Query 25203 TTAGTGCT 25210
| || ||
Sbjct 589738 CTCGTCCT 589745
>seq79
Length=2610973
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || |||||| | ||||| || | ||||| | || |||||||| || ||||| |||
Sbjct 579318 TTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCATC 579377
Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127
|| | ||| || ||| ||||| || || ||||| || ||||||||||| ||
Sbjct 579378 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCTT 579437
Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186
|||||||| ||||| || | || |||| || ||| || || ||||| || || ||
Sbjct 579438 ATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 579496
>seq94
Length=69539
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052
|| || ||||| || || || ||||| | || || || | ||||| | || ||||||
Sbjct 45645 GGCACTATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAG 45586
Query 25053 TCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110
|| || || |||||||| || || ||| || ||| ||||| || || || || |
Sbjct 45585 TCCTCGGATACTATCGA--CAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCC 45528
Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170
| ||||||||||| | |||||||| ||||| || | || |||| ||||| | ||
Sbjct 45527 CGGACCAACAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCG 45468
Query 25171 ATTACAATATTCAAAA 25186
| ||||| || || ||
Sbjct 45467 ACTACAACATCCAGAA 45452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327297602395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |