Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq45 147 4e-30
seq60 120 6e-22
seq91 105 1e-17
seq58 100 6e-16
seq80 86.0 1e-11
seq61 86.0 1e-11
seq47 86.0 1e-11
>seq45
Length=537551
Score = 147 bits (162), Expect = 4e-30
Identities = 444/676 (66%), Gaps = 25/676 (4%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || || || ||||| |||||||||||||| ||||| | |||||||| || |
Sbjct 273762 GTCGGCTCGCTATCCGGTGGATGGAAGATGAAGCTCGCCCTGGCCCGCGCCATGCTGCAA 273821
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
||||| || |||||||| || || || ||||||||| ||||| | |||||||
Sbjct 273822 AAGGCCGACGTGCTACTGCTCGACGAACCTACCAACCACTTGGACGTCGCCAACGTCAAG 273881
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875
||||| | | |||||| ||||| | | || | | || || || || ||||||
Sbjct 273882 TGGCTGGAGGGCTACCTGACCAGCCACCCGGATATCACCAGTCTGATCGTGTCCCACGAC 273941
Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935
|| |||||||| || ||||| | | | |||| ||||| |||| || ||||||
Sbjct 273942 TCCGGCTTCCTCGACGCCGTCACCACCGACATCTACCACTACGAGCCCAACAAGAAGCTA 274001
Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCCGCCT 279993
|| | || |||||||||| |||| ||||| ||| ||| || ||||| ||
Sbjct 274002 GCCGTGTACCGCGGCAACCTGGCTGCCTTCGT--CAAGGTGCGGCCCGAGGCCAAGAGCT 274059
Query 279994 ACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053
|||| ||| | | ||| || ||| ||||| ||| || | ||| |
Sbjct 274060 ACTACACACTGTCTGCCTCCAACGTGCAGTTCCGCTTCCCGCCGCCCGGCATCCTGACCG 274119
Query 280054 GCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111
|| ||| || || ||||| |||| | | || ||| || | | | || ||
Sbjct 274120 GCGTCAAGTCTAACACGCGCGCCGTCATCCGCATGACC--AACGTGTCGTATACCTACCC 274177
Query 280112 CAATGGCCCCAA--CATC-TTCAGC--AGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166
||| | |||||| | || ||||| ||||| | ||| | || || || ||
Sbjct 274178 CAACGCCCCCAAGCCGTCGCTCAGCGACGTGTC--GTGTCAGCTGTCGCTGTCGTCGCGC 274235
Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226
| | |||| |||||||| ||||| || ||||| ||||| ||||| | ||||| |||
Sbjct 274236 GTGGCCATCATCGGACCCAACGGTGCCGGCAAGTCGACCCTGATCAAGCTGCTGACCGGC 274295
Query 280227 GAGA-----CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281
|||| ||||| | || || ||| |||||| ||||| |||| || | |
Sbjct 274296 GAGATGATCCCCAG--CTCT---GGCCGCGTCGAGAAGCACCCCAATTTGCGTATCGGCT 274350
Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341
|| || |||||||| | | ||| | || | ||||| || | ||| || ||||| |
Sbjct 274351 ACATCAAGCAGCACGCCCTAGAGCACGTGGAAATGCACCTAGAGAAGACCCCCAACCAGT 274410
Query 280342 ACATTCAGTGGCGCTA 280357
|| | |||||||||||
Sbjct 274411 ACCTGCAGTGGCGCTA 274426
>seq60
Length=1285956
Score = 120 bits (132), Expect = 6e-22
Identities = 452/704 (64%), Gaps = 25/704 (4%)
Strand=Plus/Plus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||||| ||| || | || |||||||| || || || | | | || || | ||
Sbjct 692598 CTGCGACTGGTCAATGAAAGCACCACGGTCGGCTGCCATCTGCACAACAGTGCGCTGGGA 692657
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
|| ||||| |||||||||| ||||||| |||| | | |||| || |||||
Sbjct 692658 AATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGCTGGCAATGTTCTG 692717
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294
||| || || || |||||| || |||||||||| | || ||||| ||| | |
Sbjct 692718 GATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAGGCCAAGGTC 692777
Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354
| ||| ||||||| | | | |||||| || ||||||| ||||| || || ||
Sbjct 692778 GACGAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCG 692837
Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCG-------CAA--AT 293405
||| ||||| || ||| | ||||| ||| || || ||| ||
Sbjct 692838 CTGGTAGATGTTGGAGGTG-----TACGGCT----CAAAGCACTCGTTGTTGCCAAGAAT 692888
Query 293406 CTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCTT--- 293462
||| | ||| || || ||||| |||| | |||| ||| | ||||| |
Sbjct 692889 CTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAG 692948
Query 293463 CTTGACACGCGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTA-ACACCCCAG 293520
||||| || | || | |||||||| |||| ||| | || | ||| |||
Sbjct 692949 CTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAG--GTCGGTGGGCTTGACATTCCAC 693006
Query 293521 AGATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCA 293580
| | | |||||| |||||||| | | ||||| |||||| |||||| | || ||
Sbjct 693007 ATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCC 693066
Query 293581 TGCTCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATC 293640
| ||| | | || ||| || ||| | |||||| ||| ||| ||||||||||
Sbjct 693067 TCCTCCTTGGCGATCTCCACGGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATC 693126
Query 293641 TCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACA 293700
| |||| |||| ||||||| | || ||||| ||||| ||| || ||| ||
Sbjct 693127 TGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCA 693186
Query 293701 TCCTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCC 293760
|| ||||||||| ||||| ||||| | |||||| | ||| ||||||| | |||
Sbjct 693187 TCAGCCAGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 693246
Query 293761 TCGGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
||||| || | || | ||||||||| | | || ||||||
Sbjct 693247 TCGGGCACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTT 693290
>seq91
Length=103379
Score = 105 bits (116), Expect = 1e-17
Identities = 176/251 (70%), Gaps = 5/251 (2%)
Strand=Plus/Plus
Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375
||||||| || ||| | ||| ||| |||||||| || || |||| |||||||
Sbjct 15757 AGGACGATGCCGAGGATGAGGAGGAG---GGTGAGGACCTTTGCAACTGCACCTTCTCGC 15813
Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435
|||| || |||| |||||||| || ||| |||| |||| | ||||||||||| | |
Sbjct 15814 TCGCCTACGGTGCCAAGATTCTTCTCAACCAGACCCACCTCCGCCTCAAGCGTGGCCAGC 15873
Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495
| || ||||| ||| ||||| || |||| ||| ||||| ||||| ||||| |
Sbjct 15874 GCTACGGTCTTTGCGGACCCAACGGTTCGGGCAAGTCGACTCTCATGCGTGCCATCAACA 15933
Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554
||| ||| | | ||| ||||| | ||| ||||| | ||| || | || ||||||
Sbjct 15934 ACGAGCAGGTCG-AGGGTTTCCCCAAGCAGAGCGAGGTCAAGACTGTCTTCGTCGAGCAC 15992
Query 279555 GACATCGACTC 279565
|| | |||||
Sbjct 15993 GATCTGGACTC 16003
>seq58
Length=769140
Score = 100 bits (110), Expect = 6e-16
Identities = 243/365 (67%), Gaps = 6/365 (2%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| |||| ||||| |||||||||||| |||||||| |||
Sbjct 628467 TCGAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTG 628408
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| |||||| ||| | ||| || || || | | |||||| || || ||||| |
Sbjct 628407 GCCTTGTACACCTTCTCGTTGCCGAGAGCGACCAGCAGGCGGTCGGCGACGAACTCGATG 628348
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| | ||||||||| | || || || | ||||| ||||
Sbjct 628347 TACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATG 628288
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTGTGCCAGAGAC 251799
|| |||| ||| |||| || || || | ||| || | || || | |
Sbjct 628287 AACTCCTGCTCGATGGCCACGGCATCGGTGATGATTCTCTGGATGAC--GTCCTTGCTGG 628230
Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859
|| || || || | ||| | || || | | || | |||||||||||||||
Sbjct 628229 GGC-GGTGCTTGAGGTGGGAGAAGAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCA 628171
Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919
|| ||| | ||||||||| | |||||| ||||||| || || ||| ||| ||||
Sbjct 628170 CGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCCGCGCTTCTTGACCCAG 628111
Query 251920 AAGAT 251924
|||||
Sbjct 628110 AAGAT 628106
>seq80
Length=339303
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 24232 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 24291
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 24292 CCCGCATCGGGC 24303
>seq61
Length=389693
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 124485 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 124426
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 124425 CCCGCATCGGGC 124414
>seq47
Length=1202462
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 285701 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 285760
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 285761 CCCGCATCGGGC 285772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027835048501853
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