Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq45 147 4e-30 seq60 120 6e-22 seq91 105 1e-17 seq58 100 6e-16 seq80 86.0 1e-11 seq61 86.0 1e-11 seq47 86.0 1e-11 >seq45 Length=537551 Score = 147 bits (162), Expect = 4e-30 Identities = 444/676 (66%), Gaps = 25/676 (4%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || || ||||| |||||||||||||| ||||| | |||||||| || | Sbjct 273762 GTCGGCTCGCTATCCGGTGGATGGAAGATGAAGCTCGCCCTGGCCCGCGCCATGCTGCAA 273821 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || |||||||| || || || ||||||||| ||||| | ||||||| Sbjct 273822 AAGGCCGACGTGCTACTGCTCGACGAACCTACCAACCACTTGGACGTCGCCAACGTCAAG 273881 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| ||||| | | || | | || || || || |||||| Sbjct 273882 TGGCTGGAGGGCTACCTGACCAGCCACCCGGATATCACCAGTCTGATCGTGTCCCACGAC 273941 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || |||||||| || ||||| | | | |||| ||||| |||| || |||||| Sbjct 273942 TCCGGCTTCCTCGACGCCGTCACCACCGACATCTACCACTACGAGCCCAACAAGAAGCTA 274001 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCCGCCT 279993 || | || |||||||||| |||| ||||| ||| ||| || ||||| || Sbjct 274002 GCCGTGTACCGCGGCAACCTGGCTGCCTTCGT--CAAGGTGCGGCCCGAGGCCAAGAGCT 274059 Query 279994 ACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 |||| ||| | | ||| || ||| ||||| ||| || | ||| | Sbjct 274060 ACTACACACTGTCTGCCTCCAACGTGCAGTTCCGCTTCCCGCCGCCCGGCATCCTGACCG 274119 Query 280054 GCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111 || ||| || || ||||| |||| | | || ||| || | | | || || Sbjct 274120 GCGTCAAGTCTAACACGCGCGCCGTCATCCGCATGACC--AACGTGTCGTATACCTACCC 274177 Query 280112 CAATGGCCCCAA--CATC-TTCAGC--AGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166 ||| | |||||| | || ||||| ||||| | ||| | || || || || Sbjct 274178 CAACGCCCCCAAGCCGTCGCTCAGCGACGTGTC--GTGTCAGCTGTCGCTGTCGTCGCGC 274235 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 | | |||| |||||||| ||||| || ||||| ||||| ||||| | ||||| ||| Sbjct 274236 GTGGCCATCATCGGACCCAACGGTGCCGGCAAGTCGACCCTGATCAAGCTGCTGACCGGC 274295 Query 280227 GAGA-----CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281 |||| ||||| | || || ||| |||||| ||||| |||| || | | Sbjct 274296 GAGATGATCCCCAG--CTCT---GGCCGCGTCGAGAAGCACCCCAATTTGCGTATCGGCT 274350 Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341 || || |||||||| | | ||| | || | ||||| || | ||| || ||||| | Sbjct 274351 ACATCAAGCAGCACGCCCTAGAGCACGTGGAAATGCACCTAGAGAAGACCCCCAACCAGT 274410 Query 280342 ACATTCAGTGGCGCTA 280357 || | ||||||||||| Sbjct 274411 ACCTGCAGTGGCGCTA 274426 >seq60 Length=1285956 Score = 120 bits (132), Expect = 6e-22 Identities = 452/704 (64%), Gaps = 25/704 (4%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| || | || |||||||| || || || | | | || || | || Sbjct 692598 CTGCGACTGGTCAATGAAAGCACCACGGTCGGCTGCCATCTGCACAACAGTGCGCTGGGA 692657 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 || ||||| |||||||||| ||||||| |||| | | |||| || ||||| Sbjct 692658 AATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGCTGGCAATGTTCTG 692717 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 ||| || || || |||||| || |||||||||| | || ||||| ||| | | Sbjct 692718 GATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAGGCCAAGGTC 692777 Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354 | ||| ||||||| | | | |||||| || ||||||| ||||| || || || Sbjct 692778 GACGAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCG 692837 Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCG-------CAA--AT 293405 ||| ||||| || ||| | ||||| ||| || || ||| || Sbjct 692838 CTGGTAGATGTTGGAGGTG-----TACGGCT----CAAAGCACTCGTTGTTGCCAAGAAT 692888 Query 293406 CTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCTT--- 293462 ||| | ||| || || ||||| |||| | |||| ||| | ||||| | Sbjct 692889 CTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAG 692948 Query 293463 CTTGACACGCGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTA-ACACCCCAG 293520 ||||| || | || | |||||||| |||| ||| | || | ||| ||| Sbjct 692949 CTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAG--GTCGGTGGGCTTGACATTCCAC 693006 Query 293521 AGATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCA 293580 | | | |||||| |||||||| | | ||||| |||||| |||||| | || || Sbjct 693007 ATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCC 693066 Query 293581 TGCTCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATC 293640 | ||| | | || ||| || ||| | |||||| ||| ||| |||||||||| Sbjct 693067 TCCTCCTTGGCGATCTCCACGGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATC 693126 Query 293641 TCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACA 293700 | |||| |||| ||||||| | || ||||| ||||| ||| || ||| || Sbjct 693127 TGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCA 693186 Query 293701 TCCTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCC 293760 || ||||||||| ||||| ||||| | |||||| | ||| ||||||| | ||| Sbjct 693187 TCAGCCAGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 693246 Query 293761 TCGGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 ||||| || | || | ||||||||| | | || |||||| Sbjct 693247 TCGGGCACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTT 693290 >seq91 Length=103379 Score = 105 bits (116), Expect = 1e-17 Identities = 176/251 (70%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||||||| || ||| | ||| ||| |||||||| || || |||| ||||||| Sbjct 15757 AGGACGATGCCGAGGATGAGGAGGAG---GGTGAGGACCTTTGCAACTGCACCTTCTCGC 15813 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 |||| || |||| |||||||| || ||| |||| |||| | ||||||||||| | | Sbjct 15814 TCGCCTACGGTGCCAAGATTCTTCTCAACCAGACCCACCTCCGCCTCAAGCGTGGCCAGC 15873 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| ||| ||||| || |||| ||| ||||| ||||| ||||| | Sbjct 15874 GCTACGGTCTTTGCGGACCCAACGGTTCGGGCAAGTCGACTCTCATGCGTGCCATCAACA 15933 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | | ||| ||||| | ||| ||||| | ||| || | || |||||| Sbjct 15934 ACGAGCAGGTCG-AGGGTTTCCCCAAGCAGAGCGAGGTCAAGACTGTCTTCGTCGAGCAC 15992 Query 279555 GACATCGACTC 279565 || | ||||| Sbjct 15993 GATCTGGACTC 16003 >seq58 Length=769140 Score = 100 bits (110), Expect = 6e-16 Identities = 243/365 (67%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||| ||||| |||||||||||| |||||||| ||| Sbjct 628467 TCGAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTG 628408 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||||| ||| | ||| || || || | | |||||| || || ||||| | Sbjct 628407 GCCTTGTACACCTTCTCGTTGCCGAGAGCGACCAGCAGGCGGTCGGCGACGAACTCGATG 628348 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | ||||||||| | || || || | ||||| |||| Sbjct 628347 TACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATG 628288 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTGTGCCAGAGAC 251799 || |||| ||| |||| || || || | ||| || | || || | | Sbjct 628287 AACTCCTGCTCGATGGCCACGGCATCGGTGATGATTCTCTGGATGAC--GTCCTTGCTGG 628230 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 || || || || | ||| | || || | | || | ||||||||||||||| Sbjct 628229 GGC-GGTGCTTGAGGTGGGAGAAGAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCA 628171 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||| | ||||||||| | |||||| ||||||| || || ||| ||| |||| Sbjct 628170 CGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCCGCGCTTCTTGACCCAG 628111 Query 251920 AAGAT 251924 ||||| Sbjct 628110 AAGAT 628106 >seq80 Length=339303 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 24232 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 24291 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 24292 CCCGCATCGGGC 24303 >seq61 Length=389693 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 124485 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 124426 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 124425 CCCGCATCGGGC 124414 >seq47 Length=1202462 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 285701 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 285760 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 285761 CCCGCATCGGGC 285772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835048501853