Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq101 158 2e-33 seq58 140 6e-28 seq79 138 2e-27 seq60 107 4e-18 seq91 91.5 3e-13 >seq101 Length=737149 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||||||||| |||||||| || || || Sbjct 589988 CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 589929 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | || || || || ||| Sbjct 589928 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGA 589869 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| | ||||||| ||||| || || | || || || Sbjct 589868 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACC 589809 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 589808 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || |||||||| || |||||||| || || || Sbjct 590216 CCACCACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 590157 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | || || || || || Sbjct 590156 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 590097 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| | ||| ||| |||||||| || | || || || Sbjct 590096 ATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACC 590037 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || || |||||||||||||| |||||||| Sbjct 590036 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990 >seq58 Length=769140 Score = 140 bits (154), Expect = 6e-28 Identities = 552/864 (64%), Gaps = 17/864 (2%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || || || |||||||||||||| |||||| Sbjct 628506 TTCATGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCG 628447 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 | || || ||| ||||||||||||||||||||| ||| || ||| || Sbjct 628446 CCCAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTG 628387 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 ||||| || | | |||||| || ||||||||||||||||| |||||||| | | Sbjct 628386 CCGAGAGCGACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCG 628327 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | || | |||||| | || ||| ||||| |||| ||| |||| || Sbjct 628326 TTCATGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCGATGGCCACG 628267 Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232 || || || ||| |||| | ||||| | | || || ||| | || | Sbjct 628266 GCATCGGTGATGATTCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTGGGAGAAG 628207 Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292 || || | || | ||| || |||||||| || ||| | ||||||||| || Sbjct 628206 AGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAG 628147 Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAG 10352 ||| |||||||| | || || || | |||||| || | |||| | ||| | Sbjct 628146 GTCAGGCCGGGCATCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTG 628087 Query 10353 AACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGC 10410 | |||||| ||||| ||| | |||| || ||||||| || |||| || | Sbjct 628086 A--AGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGA-CGACTCC 628030 Query 10411 GCGAAAAGTATTTCG----AGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCG 10466 | | || | |||||| | |||||||| | | | ||||| || || Sbjct 628029 TTGTCCTGGATCCAGCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCA 627970 Query 10467 ATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGG 10526 || || | |||||| |||| | |||| || | |||| |||||| Sbjct 627969 ATGGCGTTGAAGAGGAACGAGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGC 627910 Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCC 10586 ||||| |||| ||||| | |||| | |||| | ||||||| || ||| Sbjct 627909 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCC 627850 Query 10587 GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCG 10646 || || || || || || | | ||||||||| | || ||||| || Sbjct 627849 TCAGGCACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCA 627790 Query 10647 CTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA----G 10702 | || |||||| | || |||||| ||||||| ||||| |||||||||| | Sbjct 627789 GACGCGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGTTCAGGCGG 627730 Query 10703 TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGT 10762 || || |||||| | ||||| | || | || |||||| | |||||||| | Sbjct 627729 TTGTT----CCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGA 627674 Query 10763 GGCAACGGCCTTCTTGTACATCTG 10786 ||| | ||||||||||||||||| Sbjct 627673 GGCCTCAGCCTTCTTGTACATCTG 627650 >seq79 Length=2610973 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || || || || |||| ||||| || | |||||| || || || || Sbjct 579496 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 579437 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | |||||||| || |||||||| |||||||| || ||||| | ||||||| ||| Sbjct 579436 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 579377 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | |||||| || ||||| ||||| ||||||||||| Sbjct 579376 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318 >seq60 Length=1285956 Score = 107 bits (118), Expect = 4e-18 Identities = 440/686 (64%), Gaps = 17/686 (2%) Strand=Plus/Plus Query 30920 CTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGA 30979 ||| | |||||||| || | ||| ||||| ||||| | | | || || | || Sbjct 692598 CTGCGACTGGTCAATGAAAGCACCACGGTCGGCTGCCATCTGCACAACAGTGCGCTGGGA 692657 Query 30980 CAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGACAC-GTT 31038 | ||||| | |||||||| | ||||||| |||| |||||| || || ||| Sbjct 692658 AATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGC---TGGCAATGTT 692714 Query 31039 --GGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACG 31096 |||| || || || |||||| || |||||||||| | || |||||| |||| | Sbjct 692715 CTGGATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAGGCCAAG 692774 Query 31097 AGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCG 31156 ||| ||| ||||| | | | ||||||||| |||||||||||||||| || Sbjct 692775 GTCGACGAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACG 692834 Query 31157 GCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTACGGACCCGCAGATTTGCG 31215 ||| ||| | || || ||| |||||| | ||| ||| | || || |||| Sbjct 692835 GCGCTGGTAGATGTTGGAGGTGTACGGCTCAA-AGCACTCGTTGTTGCCAAGAATCTGCG 692893 Query 31216 CGGTGGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACCCTT---CTTGA 31272 ||| || |||||||| | || ||| || | ||||| | ||||| Sbjct 692894 AGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGA 692953 Query 31273 CGCGCTCTTCGAGGGTCTTCCAGTCA---AGGCGAGTTACCGGCTCGGTTCCCCAGAGGT 31329 |||| | ||| | | |||||| ||| || |||| | ||| | || Sbjct 692954 TCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGGTG---GGCTTGACATTCCACATGT 693010 Query 31330 GATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCT 31389 | |||||| | ||| |||| ||||||| |||||| |||| | | || || | || Sbjct 693011 CAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCT 693070 Query 31390 CTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCC 31449 | | |||| || |||||| || || || ||| || |||| ||||| | | Sbjct 693071 CCTTGGCGATCTCCACGGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCT 693130 Query 31450 GGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCT 31509 |||| || | | ||| || | || ||||| ||||||||||| || ||| | || Sbjct 693131 GGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCAG 693190 Query 31510 GAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGG 31569 |||||||| ||||| || || || ||||| |||||||||| || | ||||||| Sbjct 693191 CCAGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCGG 693250 Query 31570 GAATTGCGTAGGACATGACGTCAATG 31595 | | | |||| |||| |||||| Sbjct 693251 GCACGGGGTAGTGGTTGACATCAATG 693276 >seq91 Length=103379 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225817 GGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCC 225876 |||||| ||||| | ||| | || || ||||| | || || |||||||| || Sbjct 15956 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGAGTCGACTTGCCCGAACC 15897 Query 225877 GTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAG 225936 |||||| ||| || ||||| | | || ||||||| | |||| | || ||| || Sbjct 15896 GTTGGGTCCGCAAAGACCGTAGCGCTGGCCACGCTTGAGGCGGAGGTGGGTCTGGTTGAG 15837 Query 225937 GAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 || |||||| |||| ||||| || ||||| ||| | ||| ||||||||||||||||| Sbjct 15836 AAGAATCTTGGCACCGTAGGCGAGCGAGAAGGTGCAGTTGCAAAGGTCCTCACCCTCCTC 15777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620867802760