Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq101 158 2e-33
seq58 140 6e-28
seq79 138 2e-27
seq60 107 4e-18
seq91 91.5 3e-13
>seq101
Length=737149
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || ||||||||||| |||||||| || || ||
Sbjct 589988 CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 589929
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || || | || || || || |||
Sbjct 589928 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGA 589869
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || || ||||| | ||||||| ||||| || || | || || ||
Sbjct 589868 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACC 589809
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||||||||||||||| ||||||||
Sbjct 589808 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||||||| || |||||||| || |||||||| || || ||
Sbjct 590216 CCACCACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 590157
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| ||||| | || || || || ||
Sbjct 590156 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 590097
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || || ||||| | ||| ||| |||||||| || | || || ||
Sbjct 590096 ATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACC 590037
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| |||||||| || || || |||||||||||||| ||||||||
Sbjct 590036 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990
>seq58
Length=769140
Score = 140 bits (154), Expect = 6e-28
Identities = 552/864 (64%), Gaps = 17/864 (2%)
Strand=Plus/Minus
Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992
|||||||| || ||||||||||| || || || |||||||||||||| ||||||
Sbjct 628506 TTCATGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCG 628447
Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052
| || || ||| ||||||||||||||||||||| ||| || ||| ||
Sbjct 628446 CCCAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTG 628387
Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112
||||| || | | |||||| || ||||||||||||||||| |||||||| | |
Sbjct 628386 CCGAGAGCGACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCG 628327
Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172
|||||||| | || | |||||| | || ||| ||||| |||| ||| |||| ||
Sbjct 628326 TTCATGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCGATGGCCACG 628267
Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232
|| || || ||| |||| | ||||| | | || || ||| | || |
Sbjct 628266 GCATCGGTGATGATTCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTGGGAGAAG 628207
Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292
|| || | || | ||| || |||||||| || ||| | ||||||||| ||
Sbjct 628206 AGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAG 628147
Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAG 10352
||| |||||||| | || || || | |||||| || | |||| | ||| |
Sbjct 628146 GTCAGGCCGGGCATCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTG 628087
Query 10353 AACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGC 10410
| |||||| ||||| ||| | |||| || ||||||| || |||| || |
Sbjct 628086 A--AGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGA-CGACTCC 628030
Query 10411 GCGAAAAGTATTTCG----AGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCG 10466
| | || | |||||| | |||||||| | | | ||||| || ||
Sbjct 628029 TTGTCCTGGATCCAGCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCA 627970
Query 10467 ATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGG 10526
|| || | |||||| |||| | |||| || | |||| ||||||
Sbjct 627969 ATGGCGTTGAAGAGGAACGAGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGC 627910
Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCC 10586
||||| |||| ||||| | |||| | |||| | ||||||| || |||
Sbjct 627909 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCC 627850
Query 10587 GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCG 10646
|| || || || || || | | ||||||||| | || ||||| ||
Sbjct 627849 TCAGGCACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCA 627790
Query 10647 CTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA----G 10702
| || |||||| | || |||||| ||||||| ||||| |||||||||| |
Sbjct 627789 GACGCGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGTTCAGGCGG 627730
Query 10703 TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGT 10762
|| || |||||| | ||||| | || | || |||||| | |||||||| |
Sbjct 627729 TTGTT----CCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGA 627674
Query 10763 GGCAACGGCCTTCTTGTACATCTG 10786
||| | |||||||||||||||||
Sbjct 627673 GGCCTCAGCCTTCTTGTACATCTG 627650
>seq79
Length=2610973
Score = 138 bits (152), Expect = 2e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || || || || |||| ||||| || | |||||| || || || ||
Sbjct 579496 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 579437
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | |||||||| || |||||||| |||||||| || ||||| | ||||||| |||
Sbjct 579436 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 579377
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | |||||| || ||||| ||||| |||||||||||
Sbjct 579376 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318
>seq60
Length=1285956
Score = 107 bits (118), Expect = 4e-18
Identities = 440/686 (64%), Gaps = 17/686 (2%)
Strand=Plus/Plus
Query 30920 CTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGA 30979
||| | |||||||| || | ||| ||||| ||||| | | | || || | ||
Sbjct 692598 CTGCGACTGGTCAATGAAAGCACCACGGTCGGCTGCCATCTGCACAACAGTGCGCTGGGA 692657
Query 30980 CAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGACAC-GTT 31038
| ||||| | |||||||| | ||||||| |||| |||||| || || |||
Sbjct 692658 AATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGC---TGGCAATGTT 692714
Query 31039 --GGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACG 31096
|||| || || || |||||| || |||||||||| | || |||||| |||| |
Sbjct 692715 CTGGATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAGGCCAAG 692774
Query 31097 AGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCG 31156
||| ||| ||||| | | | ||||||||| |||||||||||||||| ||
Sbjct 692775 GTCGACGAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACG 692834
Query 31157 GCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTACGGACCCGCAGATTTGCG 31215
||| ||| | || || ||| |||||| | ||| ||| | || || ||||
Sbjct 692835 GCGCTGGTAGATGTTGGAGGTGTACGGCTCAA-AGCACTCGTTGTTGCCAAGAATCTGCG 692893
Query 31216 CGGTGGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACCCTT---CTTGA 31272
||| || |||||||| | || ||| || | ||||| | |||||
Sbjct 692894 AGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGA 692953
Query 31273 CGCGCTCTTCGAGGGTCTTCCAGTCA---AGGCGAGTTACCGGCTCGGTTCCCCAGAGGT 31329
|||| | ||| | | |||||| ||| || |||| | ||| | ||
Sbjct 692954 TCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGGTG---GGCTTGACATTCCACATGT 693010
Query 31330 GATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCT 31389
| |||||| | ||| |||| ||||||| |||||| |||| | | || || | ||
Sbjct 693011 CAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCT 693070
Query 31390 CTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCC 31449
| | |||| || |||||| || || || ||| || |||| ||||| | |
Sbjct 693071 CCTTGGCGATCTCCACGGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCT 693130
Query 31450 GGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCT 31509
|||| || | | ||| || | || ||||| ||||||||||| || ||| | ||
Sbjct 693131 GGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCAG 693190
Query 31510 GAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGG 31569
|||||||| ||||| || || || ||||| |||||||||| || | |||||||
Sbjct 693191 CCAGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCGG 693250
Query 31570 GAATTGCGTAGGACATGACGTCAATG 31595
| | | |||| |||| ||||||
Sbjct 693251 GCACGGGGTAGTGGTTGACATCAATG 693276
>seq91
Length=103379
Score = 91.5 bits (100), Expect = 3e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225817 GGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCC 225876
|||||| ||||| | ||| | || || ||||| | || || |||||||| ||
Sbjct 15956 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGAGTCGACTTGCCCGAACC 15897
Query 225877 GTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAG 225936
|||||| ||| || ||||| | | || ||||||| | |||| | || ||| ||
Sbjct 15896 GTTGGGTCCGCAAAGACCGTAGCGCTGGCCACGCTTGAGGCGGAGGTGGGTCTGGTTGAG 15837
Query 225937 GAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996
|| |||||| |||| ||||| || ||||| ||| | ||| |||||||||||||||||
Sbjct 15836 AAGAATCTTGGCACCGTAGGCGAGCGAGAAGGTGCAGTTGCAAAGGTCCTCACCCTCCTC 15777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921620867802760
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