Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq60 470 3e-127 seq58 432 7e-116 >seq60 Length=1285956 Score = 470 bits (520), Expect = 3e-127 Identities = 1242/1883 (66%), Gaps = 59/1883 (3%) Strand=Plus/Plus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||| | || || | || |||| ||| | ||||||||||||||||||||||| | Sbjct 692465 TGAACTGAATAGGCGCCGCAGCAGCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGAC 692524 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 || |||| || || ||||||| || | ||| |||| || | || Sbjct 692525 CAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGGG---------GT 692575 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 ||| || || ||| || ||||| |||||| | ||| | | || || || | Sbjct 692576 CCTT---CATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGGTCGGCTG 692632 Query 243921 CCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG 243979 |||| | | || | ||| || || || | |||||||||| | | ||||| | Sbjct 692633 CCATCTGCACAACAGTGCG-CTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATG 692691 Query 243980 TGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGC 244039 | | |||| | | |||||||| | |||||| |||| | | |||| || | | Sbjct 692692 TCAGCAGGGATGCTGGCAATGTTCTGGATCGAGCCGTTGTCGGCAATGATGCGGTTCTTC 692751 Query 244040 ATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACC 244099 || || ||||||||| | | | || | || || | ||| |||||| Sbjct 692752 ATCGAGTCCGACCACAGGCCAAGGTCGACGAGATCGCGGAGCAACCACGGGTTGACCACC 692811 Query 244100 TGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTC 244159 || |||||||| | ||||| ||||||||||||| |||| | || |||||| | || | Sbjct 692812 TGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATGTTGGAGGTGTACGGCTCAAAGCAC 692871 Query 244160 TCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTG 244219 || ||||||| || ||||||| || || ||||| |||||||| | || |||||||||| Sbjct 692872 TCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTG 692931 Query 244220 TTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAG---TCCCACATGCCC 244276 || | || ||||| || ||| ||| ||| ||| | ||||| | || Sbjct 692932 TTGCGAACACCGTGAAGCTTGAT-------CTG--CTCCTTCAGGCTATCCCA---GTCC 692979 Query 244277 GAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGG 244336 ||||||| | | |||| |||||||||||||||||| | |||| |||||| Sbjct 692980 CAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGGATACCCTGAGAGACGGGA 693039 Query 244337 CTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAG 244395 |||||| ||||| | ||||| || || || ||| | || || | || | || Sbjct 693040 GAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACGGAGGCCGAC-AG 693098 Query 244396 GGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT 244455 || |||| ||||||||||||||||||| || ||||| || || |||| | || | Sbjct 693099 AGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTC 693158 Query 244456 GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGG 244515 ||||| |||| || | ||| | || ||||| ||||| || || | |||||||| Sbjct 693159 AAAGGGCATGCGCAGAGCGAGGAAAGCATCAGCCAGACCCTGAACACCAACACCGATGGG 693218 Query 244516 TCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCAC 244575 | ||| ||| ||||| | || |||||||||||||| |||| | || || | Sbjct 693219 GCGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGAT 693278 Query 244576 CTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTC 244635 ||| ||||||||| | || | ||| ||| |||| || |||||| ||| | Sbjct 693279 GCGGTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCATACAC 693338 Query 244636 GTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTT 244695 | ||| | | | || | ||| | || || |||| | ||||||||| Sbjct 693339 GC------CCTTGTTG-TAGTCA-----ACATAGGCGGGCAGAGCGAGGGAGGCCAGGTT 693386 Query 244696 GCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCA 244755 ||| || |||||||| || | | ||||| | ||||| ||||| ||||| || Sbjct 693387 GCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTGGAGCT 693446 Query 244756 CTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCAT 244815 ||||| ||||||| || || ||| |||| ||| ||| ||||||||| ||||| Sbjct 693447 GCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTCCTTGTACAGCAT 693506 Query 244816 GAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTT 244875 |||||| ||||||||| ||| || |||||| | | ||| || | | |||||| Sbjct 693507 GAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAGCTTCTGAGCCTT 693566 Query 244876 GACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGG 244935 || ||| ||||| | ||||| |||||||| |||||||||||||||||| Sbjct 693567 GATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTC 693626 Query 244936 GCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCC 244995 ||| || ||| | || ||||||||| |||||||| ||| |||||||| || Sbjct 693627 GCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTT 693686 Query 244996 GTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGT 245055 | || ||| | || ||||||||| || |||||||| || ||| |||| | || |||| Sbjct 693687 CTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGC 693746 Query 245056 CCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTG 245115 | ||| ||| ||| |||||| | ||| |||| || || || || ||| |||| Sbjct 693747 GCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGATCCATGAACTCGAACACATCGGCGTG 693806 Query 245116 CCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCAT 245175 ||| ||||| | |||| || | ||||||||| ||||||||||| |||||||| || Sbjct 693807 CCACGGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATA 693866 Query 245176 CCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGT 245235 | | || |||||| | || || | || | || || || || ||| ||||| Sbjct 693867 GCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGT 693926 Query 245236 GCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGC 245291 || || || | || | | | || | | | ||||||| || | |||| Sbjct 693927 TCCGGCAATATAAGAACCAGTAGCAC---GGATAC-GGTGGACATTGAGACCAATGCCGC 693982 Query 245292 CGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGT 245351 | || ||||||||| | ||||||| |||||| |||||| || ||||| ||||||| Sbjct 693983 CAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGT 694042 Query 245352 CCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGA 245411 | ||| || | | ||| ||||| || || ||||||| || ||| | | | ||||| Sbjct 694043 CATCCTTTATATCAACCAGGAAGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGA 694102 Query 245412 ACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGA-GC 245470 | || |||||| ||| ||||| ||| | ||| || | || ||| |||| | | Sbjct 694103 AGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGA 694162 Query 245471 AGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGC 245530 | || |||| |||||| || ||| | || | ||||| |||||||||| Sbjct 694163 CGCGC-TCGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGGG 694221 Query 245531 GTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAAC 245587 |||| || || || | |||||||| ||| || ||||| || |||||||| Sbjct 694222 CGCTCGACAATCTTGCCGTCAAG---CTTGAGCAGGTAAGACCGCTCCAGGGTCTTGAAG 694278 Query 245588 CCAAAGTACGAGTAGCCAAAGTC 245610 ||||||||| |||| ||||| Sbjct 694279 CCAAAGTACTGGTAGTTGAAGTC 694301 >seq58 Length=769140 Score = 432 bits (478), Expect = 7e-116 Identities = 618/860 (72%), Gaps = 28/860 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| ||||||||||| |||||| Sbjct 627644 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 627703 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | | |||| | || | |||| || |||| || ||| || Sbjct 627704 TCCAAGGATATCCATGACTGGAACA-ACCGCCTGAACGATGACGAGCGTTTCTTCATCTC 627762 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||||||||| ||||||||||| ||||| |||||||||| | | Sbjct 627763 GCACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCG 627822 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||||||| |||||| ||||||||||||||||||||||| || Sbjct 627823 TTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 627882 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| | ||||||| |||| |||||| ||| || Sbjct 627883 GGAGAACATCCACTCCGAGACCTACTCG---CTGCTCATTGACACCTACATCAAGGAGCC 627939 Query 42593 CGTCG-AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 | ||| |||| || ||||| ||||| || || || ||||||||| ||||||| Sbjct 627940 C-TCGCAGCGCTCGTTCCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAAGG 627998 Query 42652 CGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAG 42711 | |||||||| || ||||||| || || | | | |||| || | ||||| | Sbjct 627999 CCGACTGGGCCATCCGCTGGATCCAGGACAAGGAGTCGTCCTACGGCCAGCGCCTGGTTG 628058 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| ||||||||||||||||||||||| || |||||| | || ||||||||| ||| Sbjct 628059 CCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGGGTCA 628118 Query 42772 AGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || || | ||||||||| || |||||||| ||||| || ||| | ||||||| Sbjct 628119 AGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGG 628178 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | ||||| | ||||| |||||||| || ||||| |||||||| |||| ||| | Sbjct 628179 GTCTGCACACCGACTTCGCCTGCCTGCTCTTCTC---CCACCTCAAGCACCGCCCCAGCA 628235 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 |||| ||| | |||||||| || ||||||| |||||| |||||||| |||| Sbjct 628236 AGGACGTCATCCAGAGAATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCACCG 628295 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 || | |||||| ||||| | ||||||||| | ||| ||| |||||||| ||| Sbjct 628296 AGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGT 628355 Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACACGC 43065 |||||||||| | |||| | | | | |||| || || | ||||| | Sbjct 628356 TCGTCGCCGAC---CGCCTG---CTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGGCCA 628409 Query 43066 CGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125 | |||||| ||||| ||||||||||||||| ||| |||||||||||||| ||||||| Sbjct 628410 CCAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGA 628469 Query 43126 AGCGCGTCGCCGACTACCAG 43145 |||| || | |||||||||| Sbjct 628470 AGCGTGTTGGCGACTACCAG 628489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337630036080