Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq101 140 8e-28
seq56 96.9 8e-15
seq58 93.3 1e-13
>seq101
Length=737149
Score = 140 bits (154), Expect = 8e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| |||||||| || | || || || || | ||||| || || ||||| || ||||||
Sbjct 590447 TGGCCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 590388
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| || || || | || || || ||||| ||||| ||||| ||
Sbjct 590387 GAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGG 590328
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || |||||||| || |||| |||||||| || || | ||| |||||
Sbjct 590327 GGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCC 590268
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||| |||||||| || ||||||||||| ||||| ||||||||
Sbjct 590267 ACTTCCAACGTAATCGTCTTTCCCGTCAGAGTCTTCACGAAGATCTGCAT 590218
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | || ||||| || || || | || ||||| ||||||
Sbjct 590180 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAG 590121
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| ||| ||||| || || ||||||||||| |||| ||||||||
Sbjct 590120 ATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTG 590061
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| ||| || || || || ||||| ||||| || ||||| |||||||||
Sbjct 590060 TCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACG 590001
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 590000 AAAATCTGCAT 589990
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | || | ||| ||||| ||||| || ||||| |
Sbjct 589988 CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 589929
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || || ||||| || ||||| ||| ||
Sbjct 589928 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGA 589869
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| |||| || ||||| || |||| ||| ||| || ||
Sbjct 589868 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACC 589809
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 589808 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762
Score = 123 bits (136), Expect = 6e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| |||||||| | || |||||||||| ||| || || || ||||| ||||||| |
Sbjct 589760 CCGCCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAG 589701
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || ||||| || | || || || ||||||||||| |||||||| |||
Sbjct 589700 AGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 589641
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| |||| || ||||| || |||| ||| || || ||
Sbjct 589640 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACC 589581
Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449
||||| ||||| ||||| |||||
Sbjct 589580 TCGAGGGTGATAGTCTTTCCGGT 589558
>seq56
Length=737661
Score = 96.9 bits (106), Expect = 8e-15
Identities = 203/303 (67%), Gaps = 0/303 (0%)
Strand=Plus/Minus
Query 326027 TGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATG 326086
|||| ||||| |||| ||||| || ||| | ||||| |||| |||| ||||
Sbjct 89952 TGGAGGAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGGCCATG 89893
Query 326087 ATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGG 326146
||||||| |||||| || || || |||||| | ||||| | | | ||
Sbjct 89892 ATCATCAAATGACCATACCGCAGACCCTTCGTGTCGGTATACACCGTCTTGTGCTTCAGT 89833
Query 326147 CCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGATGCA 326206
|| |||| || |||| | |||||| | ||||||| |||| | || || ||
Sbjct 89832 CCCAGAAACTGCTTGATGTTTTGGATTTCCTGGTTCTTCATGATCTGATCAACCGACGCG 89773
Query 326207 TCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 326266
|| ||||||||||| || |||||||| || |||||||| ||| | ||| || |||
Sbjct 89772 TCACGGACGTTCAACAGCTTTCCACGCAGCGGGAACACACCAATACGGTCGGGATCGAGG 89713
Query 326267 ACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTG 326326
| || | || || | || || || ||| || || || |||||||| ||||| |||
Sbjct 89712 ATGGCACGGCCAGCAACAGCCAGACTCTTTGCAGAGTCACCTTCCGTCAGGATGAGCGTG 89653
Query 326327 CAC 326329
|||
Sbjct 89652 CAC 89650
Score = 84.2 bits (92), Expect = 5e-11
Identities = 179/265 (68%), Gaps = 8/265 (3%)
Strand=Plus/Minus
Query 325392 AGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAG 325451
|||||| ||| ||| ||| ||| | || ||||| | ||| ||| |||| |
Sbjct 90614 AGTTGACGTTGTTGGATCCAACAAACGTTTGCGCAAGACCAATGATCGTCTGCTGCATGG 90555
Query 325452 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCT 325511
||| || || || || || || | || | | || ||||||| |||| |||||
Sbjct 90554 ATGTATCACCGTGCTGGTAAGCCGTCTGTCCAGAAATGTAACCGGCCAACTCAATAACCT 90495
Query 325512 TCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTT 325571
|| ||||| |||| |||||||||||| | || ||||| || || ||| ||| |
Sbjct 90494 TCTCGTCGTGGGTCACATTGCGCTTGAAGCACGCGTAGATCACCTTGCGCTGACCAGGCT 90435
Query 325572 TGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGC----GAGAACAAA 325627
| || ||||| | |||||||| || ||| | || || | || ||||||| |
Sbjct 90434 TCAAGCCATCCAGAACCGACGGGATCGATCG---AATATTGT-CGGCCATGGAGAACAGA 90379
Query 325628 ATAAGTTCCTTGTCGATGAAGTCGG 325652
|| |||||||||| |||||||||||
Sbjct 90378 ATCAGTTCCTTGTTGATGAAGTCGG 90354
>seq58
Length=769140
Score = 93.3 bits (102), Expect = 1e-13
Identities = 155/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178
|||||||| || ||| | || || | || | || ||||| ||| || |||||
Sbjct 628283 GAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAG 628342
Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238
|| || ||||| ||||| || || || | | || ||||| | ||||| ||||||
Sbjct 628343 CAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAGAAGGTGTAC 628402
Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298
|| | | || ||||| | ||| ||||| || ||||| | || ||||| ||||||
Sbjct 628403 AAGGCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTC 628462
Query 269299 TTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATGAA 269342
||||| |||||||| ||||||| || ||||||| |||||
Sbjct 628463 TTCGAGAAGCGTGTTGGCGACTACCAGAAGGCTGGTGTCATGAA 628506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179652389795174
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |