Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq101 140 8e-28 seq56 96.9 8e-15 seq58 93.3 1e-13 >seq101 Length=737149 Score = 140 bits (154), Expect = 8e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || |||||||| || | || || || || | ||||| || || ||||| || |||||| Sbjct 590447 TGGCCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 590388 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| || || || | || || || ||||| ||||| ||||| || Sbjct 590387 GAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGG 590328 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || |||||||| || |||| |||||||| || || | ||| ||||| Sbjct 590327 GGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCC 590268 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||| |||||||| || ||||||||||| ||||| |||||||| Sbjct 590267 ACTTCCAACGTAATCGTCTTTCCCGTCAGAGTCTTCACGAAGATCTGCAT 590218 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || || || | || ||||| |||||| Sbjct 590180 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAG 590121 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| ||||| || || ||||||||||| |||| |||||||| Sbjct 590120 ATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTG 590061 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || || || ||||| ||||| || ||||| ||||||||| Sbjct 590060 TCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACG 590001 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 590000 AAAATCTGCAT 589990 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | || | ||| ||||| ||||| || ||||| | Sbjct 589988 CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 589929 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| || ||||| ||| || Sbjct 589928 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGA 589869 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| |||| || ||||| || |||| ||| ||| || || Sbjct 589868 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACC 589809 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 589808 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || |||||||||| ||| || || || ||||| ||||||| | Sbjct 589760 CCGCCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAG 589701 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || ||||||||||| |||||||| ||| Sbjct 589700 AGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 589641 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| |||| || ||||| || |||| ||| || || || Sbjct 589640 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACC 589581 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 ||||| ||||| ||||| ||||| Sbjct 589580 TCGAGGGTGATAGTCTTTCCGGT 589558 >seq56 Length=737661 Score = 96.9 bits (106), Expect = 8e-15 Identities = 203/303 (67%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 326027 TGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATG 326086 |||| ||||| |||| ||||| || ||| | ||||| |||| |||| |||| Sbjct 89952 TGGAGGAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGGCCATG 89893 Query 326087 ATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGG 326146 ||||||| |||||| || || || |||||| | ||||| | | | || Sbjct 89892 ATCATCAAATGACCATACCGCAGACCCTTCGTGTCGGTATACACCGTCTTGTGCTTCAGT 89833 Query 326147 CCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGATGCA 326206 || |||| || |||| | |||||| | ||||||| |||| | || || || Sbjct 89832 CCCAGAAACTGCTTGATGTTTTGGATTTCCTGGTTCTTCATGATCTGATCAACCGACGCG 89773 Query 326207 TCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 326266 || ||||||||||| || |||||||| || |||||||| ||| | ||| || ||| Sbjct 89772 TCACGGACGTTCAACAGCTTTCCACGCAGCGGGAACACACCAATACGGTCGGGATCGAGG 89713 Query 326267 ACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTG 326326 | || | || || | || || || ||| || || || |||||||| ||||| ||| Sbjct 89712 ATGGCACGGCCAGCAACAGCCAGACTCTTTGCAGAGTCACCTTCCGTCAGGATGAGCGTG 89653 Query 326327 CAC 326329 ||| Sbjct 89652 CAC 89650 Score = 84.2 bits (92), Expect = 5e-11 Identities = 179/265 (68%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 325392 AGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAG 325451 |||||| ||| ||| ||| ||| | || ||||| | ||| ||| |||| | Sbjct 90614 AGTTGACGTTGTTGGATCCAACAAACGTTTGCGCAAGACCAATGATCGTCTGCTGCATGG 90555 Query 325452 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCT 325511 ||| || || || || || || | || | | || ||||||| |||| ||||| Sbjct 90554 ATGTATCACCGTGCTGGTAAGCCGTCTGTCCAGAAATGTAACCGGCCAACTCAATAACCT 90495 Query 325512 TCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTT 325571 || ||||| |||| |||||||||||| | || ||||| || || ||| ||| | Sbjct 90494 TCTCGTCGTGGGTCACATTGCGCTTGAAGCACGCGTAGATCACCTTGCGCTGACCAGGCT 90435 Query 325572 TGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGC----GAGAACAAA 325627 | || ||||| | |||||||| || ||| | || || | || ||||||| | Sbjct 90434 TCAAGCCATCCAGAACCGACGGGATCGATCG---AATATTGT-CGGCCATGGAGAACAGA 90379 Query 325628 ATAAGTTCCTTGTCGATGAAGTCGG 325652 || |||||||||| ||||||||||| Sbjct 90378 ATCAGTTCCTTGTTGATGAAGTCGG 90354 >seq58 Length=769140 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178 |||||||| || ||| | || || | || | || ||||| ||| || ||||| Sbjct 628283 GAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAG 628342 Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238 || || ||||| ||||| || || || | | || ||||| | ||||| |||||| Sbjct 628343 CAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAGAAGGTGTAC 628402 Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298 || | | || ||||| | ||| ||||| || ||||| | || ||||| |||||| Sbjct 628403 AAGGCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTC 628462 Query 269299 TTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATGAA 269342 ||||| |||||||| ||||||| || ||||||| ||||| Sbjct 628463 TTCGAGAAGCGTGTTGGCGACTACCAGAAGGCTGGTGTCATGAA 628506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652389795174