Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq58 131 4e-25
seq91 105 1e-17
seq56 91.5 3e-13
seq45 89.7 1e-12
>seq58
Length=769140
Score = 131 bits (144), Expect = 4e-25
Identities = 182/255 (71%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 243501 AATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG 243560
||||||||| || || || | | ||| |||| ||||| ||| ||| | || |||
Sbjct 628252 AATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGC 628311
Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620
|| | ||||||||| | || ||| ||||||||||| ||||| ||||||||| |
Sbjct 628312 CCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 628371
Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680
| |||| || || | ||||| |||||||| ||| |||||||||| ||| |||||
Sbjct 628372 GCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATGGA 628431
Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACG 243740
| ||| ||||| || || || ||||||||||| |||||||| | || || ||
Sbjct 628432 GAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAGAA 628491
Query 243741 CCCTGGTGTGATGAA 243755
||||||| |||||
Sbjct 628492 GGCTGGTGTCATGAA 628506
>seq91
Length=103379
Score = 105 bits (116), Expect = 1e-17
Identities = 391/601 (65%), Gaps = 24/601 (4%)
Strand=Plus/Minus
Query 333337 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 333396
||||||| ||||| |||| || ||| |||| ||||| | ||||||||| ||| |
Sbjct 16794 AACGCCACTGGATGTACTCCGACGGAGTCTTGTCCAGATGGTTATCGATGTGGGCGAAGG 16735
Query 333397 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTGGTGG 333456
| ||||| | |||||||| ||| || || |||| ||| ||| |||||
Sbjct 16734 CGTGCTGCTTGATGTAAGCAATACGGATGTTCTCGTGCTGGTAAATCTCACCGGCGGTGG 16675
Query 333457 CTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTTCGCCTA 333516
||| | ||||| ||||| || |||||||| ||||| || || || ||| |
Sbjct 16674 GGACCAGCTCTCCCGTCAGCACGTTGATGAGAGTCGACTTTCCGGCTCCGTTGGGGCCAA 16615
Query 333517 CCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTT 333576
||| |||| | ||| | || || |||| | | | | ||| | ||
Sbjct 16614 TAACAGCAATACGCGAGCTGAGAGAGCACTGGAAGGTGATATCGGCAATCTGGGGCTTGG 16555
Query 333577 CCGTACCCGGATACTTGAACCCCACACCGCGTAGCTT-CATGATGGCACGGTCCTTCGAA 333635
|| || || |||| ||| | || | ||||| || ||||| | |||| |
Sbjct 16554 AGGTGCCAGGGTACTGGAAGCTCAT-CTTAGTAGCACGCAGAATGGCCTTGGCCTTGGTC 16496
Query 333636 GTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGG 333695
||| |||||||||||| |||||||||||||| | || ||| || | |||
Sbjct 16495 TTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCAATCTCCGAGGCCCCAAGC 16436
Query 333696 GCGTAGTAA---CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 333752
|||||||| | || || |||| | ||| |||||||||| ||| || ||||||
Sbjct 16435 TCGTAGTAAGACTTGGCCGA--CGGG-CACTTGCGCACGAACTCGCGCAGGTTACCCTTG 16379
Query 333753 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT-GCAAACAGCGTCGAG 333811
|| ||| ||||| | | | ||||| ||||| || | | | ||| || ||||||
Sbjct 16378 TAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGATGAT-GTGCTGGCACACGTTGTCGAG 16323
Query 333812 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG----GTTGATCAGGT 333867
||| || |||||||| ||||| || | |||| || | ||| ||| |||||||
Sbjct 16322 GAAGCCAGAGTCGTGGGACACGAT---GATCGAA--GTGC--AAGGAGAGTTCATCAGGT 16270
Query 333868 ATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTA 333927
| || |||||| | ||||| |||| | ||||||||| |||||||| || || |
Sbjct 16269 AGTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAGCAGCA 16210
Query 333928 G 333928
|
Sbjct 16209 G 16209
Score = 86.0 bits (94), Expect = 1e-11
Identities = 171/251 (68%), Gaps = 2/251 (1%)
Strand=Plus/Minus
Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164
|||||||| ||| ||| | || ||| | ||| |||||||| || ||| | |||| |
Sbjct 16032 AGTCAATGGTAGTCATCTCAGTATCAGCAGAGTCCAGATCGTGCTCGACGAAGACAGTCT 15973
Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223
| | | || || ||| |||||| | | ||| |||| || || ||||| |||
Sbjct 15972 TGACCTCGCTCTGCTTGGGGAAACCCT-CGACCTGCTCGTTGTTGATGGCACGCATGAGA 15914
Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283
|| || || |||| ||||| || || || ||||||||||| | |||||||| || |
Sbjct 15913 GTCGACTTGCCCGAACCGTTGGGTCCGCAAAGACCGTAGCGCTGGCCACGCTTGAGGCGG 15854
Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343
| | || | ||| |||||||| || |||| || || || || || || | ||
Sbjct 15853 AGGTGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCGAGCGAGAAGGTGCAGTTGCAA 15794
Query 334344 AGATCCTCACC 334354
|| ||||||||
Sbjct 15793 AGGTCCTCACC 15783
>seq56
Length=737661
Score = 91.5 bits (100), Expect = 3e-13
Identities = 202/303 (67%), Gaps = 0/303 (0%)
Strand=Plus/Minus
Query 298148 TGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATG 298207
|||| ||||| |||| ||||| || ||| | ||||| |||| |||| ||||
Sbjct 89952 TGGAGGAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGGCCATG 89893
Query 298208 ATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGG 298267
||||||| |||||| || || || |||||| | ||||| | | | ||
Sbjct 89892 ATCATCAAATGACCATACCGCAGACCCTTCGTGTCGGTATACACCGTCTTGTGCTTCAGT 89833
Query 298268 CCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGATGCA 298327
|| |||| || |||| | |||||| | ||||||| |||| | || || ||
Sbjct 89832 CCCAGAAACTGCTTGATGTTTTGGATTTCCTGGTTCTTCATGATCTGATCAACCGACGCG 89773
Query 298328 TCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 298387
|| ||||| ||||| || |||||||| || |||||||| ||| | ||| || |||
Sbjct 89772 TCACGGACGTTCAACAGCTTTCCACGCAGCGGGAACACACCAATACGGTCGGGATCGAGG 89713
Query 298388 ACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTG 298447
| || | || || | || || || ||| || || || |||||||| ||||| |||
Sbjct 89712 ATGGCACGGCCAGCAACAGCCAGACTCTTTGCAGAGTCACCTTCCGTCAGGATGAGCGTG 89653
Query 298448 CAC 298450
|||
Sbjct 89652 CAC 89650
Score = 84.2 bits (92), Expect = 5e-11
Identities = 179/265 (68%), Gaps = 8/265 (3%)
Strand=Plus/Minus
Query 297513 AGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAG 297572
|||||| ||| ||| ||| ||| | || ||||| | ||| ||| |||| |
Sbjct 90614 AGTTGACGTTGTTGGATCCAACAAACGTTTGCGCAAGACCAATGATCGTCTGCTGCATGG 90555
Query 297573 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCT 297632
||| || || || || || || | || | | || ||||||| |||| |||||
Sbjct 90554 ATGTATCACCGTGCTGGTAAGCCGTCTGTCCAGAAATGTAACCGGCCAACTCAATAACCT 90495
Query 297633 TCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTT 297692
|| ||||| |||| |||||||||||| | || ||||| || || ||| ||| |
Sbjct 90494 TCTCGTCGTGGGTCACATTGCGCTTGAAGCACGCGTAGATCACCTTGCGCTGACCAGGCT 90435
Query 297693 TGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGC----GAGAACAAA 297748
| || ||||| | |||||||| || ||| | || || | || ||||||| |
Sbjct 90434 TCAAGCCATCCAGAACCGACGGGATCGATCG---AATATTGT-CGGCCATGGAGAACAGA 90379
Query 297749 ATAAGTTCCTTGTCGATGAAGTCGG 297773
|| |||||||||| |||||||||||
Sbjct 90378 ATCAGTTCCTTGTTGATGAAGTCGG 90354
>seq45
Length=537551
Score = 89.7 bits (98), Expect = 1e-12
Identities = 196/294 (67%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 333698 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 333757
|||||| ||| | ||||| ||| ||| ||||| | | ||| || || ||||
Sbjct 274064 GTAGTAGCTCTTGGCCTCGGGCCGCACCTTGACGAAGGCAGCCAGGTTGCCGCGGTACAC 274005
Query 333758 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 333817
||||| ||| || ||||| ||| || |||| || ||||||||||| ||
Sbjct 274004 GGCTAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGGCGTCGAGGAAGCC 273945
Query 333818 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAG 333877
||||||||| ||||| |||| | | | ||| || || ||||||| | |||
Sbjct 273944 GGAGTCGTGGGACACGATCAGACTGGTGATATCCGGGTGGCTGGTCAGGTAGCCCTCCAG 273885
Query 333878 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGC 333937
|||| | ||||| | || | |||||||| || ||||| || ||||| | | ||
Sbjct 273884 CCACTTGACGTTGGCGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGTAGCACGTCGGC 273825
Query 333938 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991
|| | ||||| || || || || ||||| ||||| ||||| || || || ||
Sbjct 273824 CTTTTGCAGCATGGCGCGGGCCAGGGCGAGCTTCATCTTCCATCCACCGGATAG 273771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102878120623550
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