Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq58 131 4e-25 seq91 105 1e-17 seq56 91.5 3e-13 seq45 89.7 1e-12 >seq58 Length=769140 Score = 131 bits (144), Expect = 4e-25 Identities = 182/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 243501 AATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG 243560 ||||||||| || || || | | ||| |||| ||||| ||| ||| | || ||| Sbjct 628252 AATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGC 628311 Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 || | ||||||||| | || ||| ||||||||||| ||||| ||||||||| | Sbjct 628312 CCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 628371 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | |||| || || | ||||| |||||||| ||| |||||||||| ||| ||||| Sbjct 628372 GCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATGGA 628431 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACG 243740 | ||| ||||| || || || ||||||||||| |||||||| | || || || Sbjct 628432 GAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAGAA 628491 Query 243741 CCCTGGTGTGATGAA 243755 ||||||| ||||| Sbjct 628492 GGCTGGTGTCATGAA 628506 >seq91 Length=103379 Score = 105 bits (116), Expect = 1e-17 Identities = 391/601 (65%), Gaps = 24/601 (4%) Strand=Plus/Minus Query 333337 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 333396 ||||||| ||||| |||| || ||| |||| ||||| | ||||||||| ||| | Sbjct 16794 AACGCCACTGGATGTACTCCGACGGAGTCTTGTCCAGATGGTTATCGATGTGGGCGAAGG 16735 Query 333397 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTGGTGG 333456 | ||||| | |||||||| ||| || || |||| ||| ||| ||||| Sbjct 16734 CGTGCTGCTTGATGTAAGCAATACGGATGTTCTCGTGCTGGTAAATCTCACCGGCGGTGG 16675 Query 333457 CTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTTCGCCTA 333516 ||| | ||||| ||||| || |||||||| ||||| || || || ||| | Sbjct 16674 GGACCAGCTCTCCCGTCAGCACGTTGATGAGAGTCGACTTTCCGGCTCCGTTGGGGCCAA 16615 Query 333517 CCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTT 333576 ||| |||| | ||| | || || |||| | | | | ||| | || Sbjct 16614 TAACAGCAATACGCGAGCTGAGAGAGCACTGGAAGGTGATATCGGCAATCTGGGGCTTGG 16555 Query 333577 CCGTACCCGGATACTTGAACCCCACACCGCGTAGCTT-CATGATGGCACGGTCCTTCGAA 333635 || || || |||| ||| | || | ||||| || ||||| | |||| | Sbjct 16554 AGGTGCCAGGGTACTGGAAGCTCAT-CTTAGTAGCACGCAGAATGGCCTTGGCCTTGGTC 16496 Query 333636 GTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGG 333695 ||| |||||||||||| |||||||||||||| | || ||| || | ||| Sbjct 16495 TTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCAATCTCCGAGGCCCCAAGC 16436 Query 333696 GCGTAGTAA---CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 333752 |||||||| | || || |||| | ||| |||||||||| ||| || |||||| Sbjct 16435 TCGTAGTAAGACTTGGCCGA--CGGG-CACTTGCGCACGAACTCGCGCAGGTTACCCTTG 16379 Query 333753 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT-GCAAACAGCGTCGAG 333811 || ||| ||||| | | | ||||| ||||| || | | | ||| || |||||| Sbjct 16378 TAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGATGAT-GTGCTGGCACACGTTGTCGAG 16323 Query 333812 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG----GTTGATCAGGT 333867 ||| || |||||||| ||||| || | |||| || | ||| ||| ||||||| Sbjct 16322 GAAGCCAGAGTCGTGGGACACGAT---GATCGAA--GTGC--AAGGAGAGTTCATCAGGT 16270 Query 333868 ATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTA 333927 | || |||||| | ||||| |||| | ||||||||| |||||||| || || | Sbjct 16269 AGTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAGCAGCA 16210 Query 333928 G 333928 | Sbjct 16209 G 16209 Score = 86.0 bits (94), Expect = 1e-11 Identities = 171/251 (68%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| ||| ||| | || ||| | ||| |||||||| || ||| | |||| | Sbjct 16032 AGTCAATGGTAGTCATCTCAGTATCAGCAGAGTCCAGATCGTGCTCGACGAAGACAGTCT 15973 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || ||| |||||| | | ||| |||| || || ||||| ||| Sbjct 15972 TGACCTCGCTCTGCTTGGGGAAACCCT-CGACCTGCTCGTTGTTGATGGCACGCATGAGA 15914 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || |||| ||||| || || || ||||||||||| | |||||||| || | Sbjct 15913 GTCGACTTGCCCGAACCGTTGGGTCCGCAAAGACCGTAGCGCTGGCCACGCTTGAGGCGG 15854 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| |||||||| || |||| || || || || || || | || Sbjct 15853 AGGTGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCGAGCGAGAAGGTGCAGTTGCAA 15794 Query 334344 AGATCCTCACC 334354 || |||||||| Sbjct 15793 AGGTCCTCACC 15783 >seq56 Length=737661 Score = 91.5 bits (100), Expect = 3e-13 Identities = 202/303 (67%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 298148 TGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATG 298207 |||| ||||| |||| ||||| || ||| | ||||| |||| |||| |||| Sbjct 89952 TGGAGGAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGGCCATG 89893 Query 298208 ATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGG 298267 ||||||| |||||| || || || |||||| | ||||| | | | || Sbjct 89892 ATCATCAAATGACCATACCGCAGACCCTTCGTGTCGGTATACACCGTCTTGTGCTTCAGT 89833 Query 298268 CCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGATGCA 298327 || |||| || |||| | |||||| | ||||||| |||| | || || || Sbjct 89832 CCCAGAAACTGCTTGATGTTTTGGATTTCCTGGTTCTTCATGATCTGATCAACCGACGCG 89773 Query 298328 TCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 298387 || ||||| ||||| || |||||||| || |||||||| ||| | ||| || ||| Sbjct 89772 TCACGGACGTTCAACAGCTTTCCACGCAGCGGGAACACACCAATACGGTCGGGATCGAGG 89713 Query 298388 ACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTG 298447 | || | || || | || || || ||| || || || |||||||| ||||| ||| Sbjct 89712 ATGGCACGGCCAGCAACAGCCAGACTCTTTGCAGAGTCACCTTCCGTCAGGATGAGCGTG 89653 Query 298448 CAC 298450 ||| Sbjct 89652 CAC 89650 Score = 84.2 bits (92), Expect = 5e-11 Identities = 179/265 (68%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 297513 AGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAG 297572 |||||| ||| ||| ||| ||| | || ||||| | ||| ||| |||| | Sbjct 90614 AGTTGACGTTGTTGGATCCAACAAACGTTTGCGCAAGACCAATGATCGTCTGCTGCATGG 90555 Query 297573 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCT 297632 ||| || || || || || || | || | | || ||||||| |||| ||||| Sbjct 90554 ATGTATCACCGTGCTGGTAAGCCGTCTGTCCAGAAATGTAACCGGCCAACTCAATAACCT 90495 Query 297633 TCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTT 297692 || ||||| |||| |||||||||||| | || ||||| || || ||| ||| | Sbjct 90494 TCTCGTCGTGGGTCACATTGCGCTTGAAGCACGCGTAGATCACCTTGCGCTGACCAGGCT 90435 Query 297693 TGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGC----GAGAACAAA 297748 | || ||||| | |||||||| || ||| | || || | || ||||||| | Sbjct 90434 TCAAGCCATCCAGAACCGACGGGATCGATCG---AATATTGT-CGGCCATGGAGAACAGA 90379 Query 297749 ATAAGTTCCTTGTCGATGAAGTCGG 297773 || |||||||||| ||||||||||| Sbjct 90378 ATCAGTTCCTTGTTGATGAAGTCGG 90354 >seq45 Length=537551 Score = 89.7 bits (98), Expect = 1e-12 Identities = 196/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 333698 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 333757 |||||| ||| | ||||| ||| ||| ||||| | | ||| || || |||| Sbjct 274064 GTAGTAGCTCTTGGCCTCGGGCCGCACCTTGACGAAGGCAGCCAGGTTGCCGCGGTACAC 274005 Query 333758 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 333817 ||||| ||| || ||||| ||| || |||| || ||||||||||| || Sbjct 274004 GGCTAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGGCGTCGAGGAAGCC 273945 Query 333818 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAG 333877 ||||||||| ||||| |||| | | | ||| || || ||||||| | ||| Sbjct 273944 GGAGTCGTGGGACACGATCAGACTGGTGATATCCGGGTGGCTGGTCAGGTAGCCCTCCAG 273885 Query 333878 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGC 333937 |||| | ||||| | || | |||||||| || ||||| || ||||| | | || Sbjct 273884 CCACTTGACGTTGGCGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGTAGCACGTCGGC 273825 Query 333938 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 || | ||||| || || || || ||||| ||||| ||||| || || || || Sbjct 273824 CTTTTGCAGCATGGCGCGGGCCAGGGCGAGCTTCATCTTCCATCCACCGGATAG 273771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878120623550