Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq60 237 2e-57 seq58 98.7 1e-15 >seq60 Length=1285956 Score = 237 bits (262), Expect = 2e-57 Identities = 942/1465 (64%), Gaps = 43/1465 (3%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| |||| ||||| |||||||||||||| ||||| || | || || | ||| | Sbjct 692842 TAGATGTTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTG 692901 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| |||| || || ||||| || | ||| | | | || | ||| Sbjct 692902 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCC 692961 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 || ||| |||||||| || | | | || | | |||||| |||||||| ||| Sbjct 692962 TTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGG 693021 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 ||||| || ||| | || || |||||| | || ||| | ||||| ||| || | Sbjct 693022 ATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATC 693081 Query 114182 TC---GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 114238 || |||| || | || || ||||| || || ||||| || || | |||| Sbjct 693082 TCCACGGAGGCCGAC---AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGC 693138 Query 114239 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACC 114297 || |||||| |||| ||||| | | || || | | || |||| || ||||| Sbjct 693139 TCCCGAGCCTCGGCGGACTCAAAGGGCATGCG-CAGAGCGAGGAAAGCATCAGCCAGACC 693197 Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CAC 114354 || ||||| | || || ||||| || | ||| || || ||||| ||| ||| Sbjct 693198 CTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC---CTCGGGCAC 693254 Query 114355 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 114414 ||| || || ||| || | | || || || | || ||| | |||| || Sbjct 693255 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 693314 Query 114415 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 114474 || ||||| || | ||| | || | | | | ||||| || || |||| Sbjct 693315 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACATAGGCGGGCAGAGCGAG 693374 Query 114475 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 114534 || ||||| || ||||||| |||||| | | |||||| || || || || || Sbjct 693375 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCA 693434 Query 114535 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 114594 || || || || |||||| |||| |||||| || || ||| |||||| || Sbjct 693435 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTC 693494 Query 114595 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA- 114653 |||||| |||||| | || | || ||||| || || | || ||| || || | ||| | Sbjct 693495 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAG 693554 Query 114654 CATCGGCGGCTGGCACAGTGGCGTTGG---CTCGCCCCTCCTCCTCGTACTTTGTGTAGA 114710 | || | | || | ||| ||| | || ||||| |||||||||| ||| | Sbjct 693555 CTTCTGAGCCTTGA----TGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACA 693610 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 |||| || ||||| || || | || | || || || || | ||||| | | Sbjct 693611 GGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCA 693670 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 ||| ||| | | || ||| ||||||||||||||||| || |||||||| ||||| Sbjct 693671 GAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGAGCCA 693730 Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 114890 ||| | ||| | ||| | || || | || || || |||| |||| || | Sbjct 693731 GGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGATCCATGAACT 693790 Query 114891 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGAC 114944 | | | ||| ||||||||||| || || || | || | | || ||| | Sbjct 693791 CGAACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTT--GTT 693848 Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 | ||| |||||| ||||| | ||| ||| || || || |||||||| || ||||||| Sbjct 693849 G-CCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATAC 693907 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 ||| || |||||| || || |||| ||| | | || | || | |||| | Sbjct 693908 CATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGGTGGACAT 693967 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 | |||||| || || ||| ||| ||||| ||||| | |||| || | |||| Sbjct 693968 TGAGACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGA 694027 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT- 115183 | || || || |||| |||| | | | |||||||| ||| | || ||||| Sbjct 694028 TACCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCTG-GGCCTGC 694086 Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCT 115241 || |||||||||||||||||||| || | || ||| ||| | | |||| ||||||| Sbjct 694087 GGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACATCA 694144 Query 115242 TATCGTAGGTCTCCAAGACG-GCGGGA--ATGTCTTCCCCGTGAATACCGATCGAGACCC 115298 | ||||||||| | |||| || || ||||| ||| | || || | | || | Sbjct 694145 AGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCCCAG---ATGCCAACAGCAACAC 694201 Query 115299 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCT 115358 |||| | ||||| ||||| || | | | || || ||| | | |||||| | Sbjct 694202 GCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAGGTAAGACC 694261 Query 115359 TCTCCAAGGTCTTGAGACCAAAATA 115383 ||||| |||||||| ||||| || Sbjct 694262 GCTCCAGGGTCTTGAAGCCAAAGTA 694286 >seq58 Length=769140 Score = 98.7 bits (108), Expect = 1e-15 Identities = 292/447 (65%), Gaps = 14/447 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| ||||||||||||||||| ||||| ||| ||| ||| |||||||| Sbjct 628486 GTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTCCAT 628427 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGC-ACCCCAATCTGTTTGAG 125871 || ||||| ||||| | | || | | | |||| | | | | | || Sbjct 628426 GAAGTCAAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGAGCGACC------AG 628373 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 || || || | |||| |||| ||||||| |||| | |||||| || | || Sbjct 628372 CAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAG 628313 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || || || || || ||||||| ||| ||| || ||||||| || | ||| Sbjct 628312 GGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCGATGGCCACGGCATCGGTGATGAT 628253 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAA 126050 || ||| |||| | || | | || | || |||||| ||| | Sbjct 628252 TCTCTGGATGACGTCCTTGCTGGGGCGGT-GCTTGAGGTGGGAGAAGAGCAGGCAGGCGA 628194 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| |||||||||||||| ||||| || || || |||||| ||| || |||| Sbjct 628193 AGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCA 628134 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 | | || |||||||| | |||||| |||| | || | ||| ||||||||| |||| Sbjct 628133 TCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCT 628074 Query 126171 CCACACACGCGAACGCAAAGAGACGCT 126197 | || || || |||| || |||| Sbjct 628073 CGACGGCGGCAAAGGCAACCAGGCGCT 628047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352606899640