Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq60 302 4e-77 >seq60 Length=1285956 Score = 302 bits (334), Expect = 4e-77 Identities = 1089/1680 (65%), Gaps = 54/1680 (3%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || |||||| ||| ||||| |||||| | || ||| Sbjct 694295 AACTACCAGTACTTTGGCTTCAAGACCCTGGAGCGGTCTTACCTGCTCAAGCTTGACGGC 694236 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||| || || || || | ||||| || || | || || || || Sbjct 694235 AAGATTGTCGAGCGCCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATCTGGGGAGAC 694176 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | || | | | | || ||| |||| | ||| ||| Sbjct 694175 AACGTCGAGCGCGTCATTGAGACCTACAACTTGATGTCCAGCAAGTTCTTCACCCATGCC 694116 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 |||| ||||| |||||||| || |||||| | | ||| | || ||||| |||||| | Sbjct 694115 TCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTT 694056 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | |||| ||| ||| || || | |||| ||||||| ||| || | ||| Sbjct 694055 GATATAAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATC 693996 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCT 94072 || || || || || || || ||| ||||||| |||| ||||| | ||||| | Sbjct 693995 TCCAAGATGGCTGGCGGCATTGGTCTCAATGTCCAC--CGTATCCGTGCTACTGGTTCTT 693938 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 | || ||| ||||||||||| ||||| || || |||| ||||| || || ||||||| Sbjct 693937 ATATTGCCGGAACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGAGTGTTCAACA 693878 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | |||||||| || ||||||||||| | | | || | || || |||||| Sbjct 693877 ACACCGCGCGCTATGTTGACCAGGGTGGCAACAAGCGCCCCGGCGCCTTTGCCATCTATC 693818 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 ||||||| |||||||| || ||| | ||||| || ||||| |||||||| || || | Sbjct 693817 TCGAGCCGTGGCACGCCGATGTGTTCGAGTTCATGGATCTGCGCAAGAACCATGGAAAGG 693758 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | |||||||| | ||| ||||| ||| | || || || || ||||| | Sbjct 693757 AGGAGGTCCGCGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGC 693698 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | |||||||| ||| ||| |||| ||| | || ||||| || || ||||| || ||| Sbjct 693697 GTGTCGAGAAGAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCG 693638 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCC 94431 || | || | || || | | |||| | ||||| | |||| | || | Sbjct 693637 ACTGCTACGGCGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGTC 693578 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | ||| || | ||| |||||||||| || ||| | || | ||| ||||| Sbjct 693577 -GCAAGACCATCAAGGCTCAGAAGCTGTGGTATGCCATCCTCGAGGCTCAGACCGAGACC 693519 Query 94492 GGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 || | |||| ||| ||| |||||| | |||| ||| |||| ||||||| || |||| Sbjct 693518 GGCAACCCCTTCATGCTGTACAAGGACCACTGT-AACCGCAAGAGCAACCAGAAGAACCT 693460 Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 || || ||||| || |||||||| ||||| | ||||| |||| || || Sbjct 693459 GGGTACCATTCGCAGCTCCAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCCGATGA 693400 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | | |||||||| ||||||| |||| || ||| || | | || || ||||| Sbjct 693399 GGTGGCTGTGTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTATGT------TGACTACA- 693347 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-CTTG- 94728 | | || | || || | ||| ||| || | || || | ||||| ||| Sbjct 693346 -ACAAGGGCGT-GTATGACTTTGAGAAGC---TGCA---CGAGGTCACCATGGTGGTTGT 693295 Query 94729 ----AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784 ||||||||| | | || || ||| ||||||||| || ||||| ||| Sbjct 693294 CCGCAACCTGAACCGCATCATTGATGTCAACCACTACCCCGTGCCCGAGGCTCGCAACAG 693235 Query 94785 AAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGAT 94844 ||| || || || |||||||| | || || |||||| | || || || | | Sbjct 693234 CAACATGCGCCACCGCCCCATCGGTGTTGGTGTTCAGGGTCTGGCTGATGCTTTCCTCGC 693175 Query 94845 GATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAG 94904 |||| |||||| || || | ||| || || |||| | | || ||||| | Sbjct 693174 TCTGCGCATGCCCTTTGAGTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGAC 693115 Query 94905 CATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG---CC 94961 ||| || ||| || || ||||| | | |||| ||| || ||| | Sbjct 693114 CATCTACCACGCTGCTCTGTCGGCCTCCGTGGAGATCGCCA---AGGA-GGAGGGAACCT 693059 Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 || | | | | || || ||| | ||||| || | ||||| ||| | ||| Sbjct 693058 ACTCCA--CCTATGAGGGCTCTCCCGTCTCTCAGGGTATCCTGCAGTTTGACATGTGGAA 693001 Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGA-AG-CTCTACGCGCTGATGTTATCAA---A 95076 ||| |||||| | | || | |||||||| || || | | || | ||||| Sbjct 693000 TGTCAAGCCCACCGACCTCTGGGACTGGGATAGCCTGAAGGAGCAG-----ATCAAGCTT 692946 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||||| ||| ||||| |||| ||||||||||| ||| || ||||||| Sbjct 692945 CACGGTGTTCGCAACAGTCTGCTGCTGGCTCCCATGCCCACTGCCAGTACCTCGCAGATT 692886 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 |||||||||||||||| || || || | |||||||||| | ||| | | || ||||| Sbjct 692885 CTTGGCAACAACGAGTGCTTTGAGCCGTACACCTCCAACATCTACCAGCGCCGTGTGCTT 692826 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGT 95255 || || || |||| || ||||| | | || || || || | || | || || | Sbjct 692825 GCTGGAGAGTTCCAGGTGGTCAACCCGTGGTTGCTCCGCGATCTCGTCGAC-CTTGGCCT 692767 Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT--C 95313 |||| ||| | | ||||||| | | || ||||||||| |||||||||| | Sbjct 692766 GTGGTCGGACTCGATGAAGAACCGCATCATTGCCGACAACGGCTCGATCCAGAACATTGC 692707 Query 95314 CCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || || || | ||||||||||| || |||||||| || ||||| || | |||||| Sbjct 692706 CAGC--ATCCCTGCTGACATCAAGGCTCTGTACAAGACGGTCTGGGAAATTTCCCAGCGC 692649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722377522680