Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq58 167 2e-36 seq101 84.2 2e-11 >seq58 Length=769140 Score = 167 bits (184), Expect = 2e-36 Identities = 314/455 (69%), Gaps = 20/455 (4%) Strand=Plus/Plus Query 52391 GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGC 52450 |||| ||||| |||| ||||| ||| ||||||||| | || || ||| ||| | Sbjct 628043 GGCC-AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTC 628101 Query 52451 CGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTT 52510 | ||||| | | || | | ||||| |||||||||||||| ||| ||||||| | Sbjct 628102 GTCGATCTTCTGGGTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCT 628161 Query 52511 GATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT------CTACTACAAGAC 52564 ||| ||||| ||||| || |||||||| ||||| || ||||| || | || | Sbjct 628162 GATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCACCTCAA 628221 Query 52565 GCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGC 52624 || | | || | || |||| |||| ||| || ||| || || ||||| Sbjct 628222 GCACC-GCCCCAGCAA--------GGACGTCATCCAGAGAATCATCACCGATGCCGTGGC 628272 Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCA 52684 ||||| ||||||| | || | || ||||| || ||||||||||||||||| || Sbjct 628273 CATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGC-CA 628331 Query 52685 GTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGC 52743 | ||| ||||||||||||| || || || || ||| |||| ||||| || | Sbjct 628332 CCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTCGCTCTCGG-CAAC 628390 Query 52744 CA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 | ||| | ||| || ||| || ||||| || ||| | ||||| ||||| | ||| Sbjct 628391 GAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGC 628450 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| ||||||||||| || ||||| || Sbjct 628451 AAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTA 628485 >seq101 Length=737149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || |||||||| || || || | Sbjct 590183 GACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCG 590124 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || ||||| || || || || || || ||| || || | Sbjct 590123 AAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGACTTCACG 590064 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | |||||| ||||| | || | || || |||||||| || || Sbjct 590063 TTGTCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTG 590004 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 590003 ACGAAAATCTGCAT 589990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261574963760