Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq58 154 1e-32 seq101 129 6e-25 seq94 87.8 2e-12 seq60 87.8 2e-12 >seq58 Length=769140 Score = 154 bits (170), Expect = 1e-32 Identities = 353/521 (68%), Gaps = 19/521 (4%) Strand=Plus/Plus Query 47066 CATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAA--C 47123 ||| |||||| | |||| |||||||| |||||||| | || | || | | | Sbjct 627976 CATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGCTGGATCCAGGACAAGGAGTC 628035 Query 47124 GTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGC 47183 ||| || |||| | || || | || || ||| |||||||||| |||||||| || Sbjct 628036 GTC-CTACGGCC-AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGT 628093 Query 47184 AGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGC 47243 ||| || |||| || | | || | || | ||||||||||| || || | Sbjct 628094 GCCTTCTCGTCGATCTTCTGGGTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCC 628153 Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT---CTACTAC 47300 |||||||| |||||| | ||||| || ||||||||| |||| ||||| || || || | Sbjct 628154 AACGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCC 628213 Query 47301 AACA-CTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAA 47357 || | || || | | ||| ||||| || | ||| || || | |||| Sbjct 628214 CACCTCAAGCACCGCCCCAGCAAG---GACGT---CATC--CAGAGA-ATCATCACCGAT 628264 Query 47358 GCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATG 47417 ||||| ||||| ||| |||||| || |||||||||||||| | | |||| ||| Sbjct 628265 GCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATG 628324 Query 47418 AACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTA 47477 ||||| |||||| |||||||||| || ||||||||||||||||| || || Sbjct 628325 AACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTCGCTCTC 628384 Query 47478 AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTC 47537 | ||| | ||| | || || || || || || ||| | ||||| ||||| Sbjct 628385 GGCAACGAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTG 628444 Query 47538 GAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | |||||||||||||| ||||||||||| || ||||| || Sbjct 628445 GGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTA 628485 >seq101 Length=737149 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | |||||| || | || ||||| || || || ||||| || | Sbjct 590216 CCACCACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 590157 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||||||| |||| | ||||||||||| || || Sbjct 590156 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 590097 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| ||| ||| | ||||| ||| ||| |||| |||||| Sbjct 590096 ATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGT-CGATGGTATCCGACGACTCGAC 590038 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || || ||||||||||| Sbjct 590037 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || |||||||| || || ||||| || | Sbjct 589988 CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 589929 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||||||||||| ||||| Sbjct 589928 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGA 589869 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| ||| ||||| | |||| || |||| ||| || Sbjct 589868 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACC 589809 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || |||||||| || || || || || |||||||| Sbjct 589808 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||||||||| ||| | || || || || ||||| || ||| Sbjct 589730 GTGGACTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCGTCCTCAAGCTGCTTGCCA 589671 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||| || || || || ||||||||||||||| ||| ||| |||| Sbjct 589670 GCGAAGATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 589611 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | |||| |||| || |||| | ||| || |||| ||| | || || ||||| Sbjct 589610 ACGTTG-TCGATAGTATCCGAAGACTCCACCTCGAGGGTGATAGTCTTTCCGGT 589558 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | ||||| ||| || ||||| || |||||| | Sbjct 590409 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 590350 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 |||| |||||||| || || || ||||||||||| ||| || ||| ||| | | Sbjct 590349 AATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTT 590290 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| |||| || ||||| | || | ||| || || |||||||| || || Sbjct 590289 ATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTCTTTCCCGTCAGAGTCTTCAC 590230 Query 127102 AAAAATCTGCAT 127113 || |||||||| Sbjct 590229 GAAGATCTGCAT 590218 >seq94 Length=69539 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || ||||| | ||| Sbjct 45452 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATC 45511 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||| || || || || ||||||||||||||| ||| ||| ||||| | ||| Sbjct 45512 AGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 45571 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | || |||| ||| || || | ||| | || ||||| || || || || || ||| Sbjct 45572 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 45631 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 45632 ATCTGCAT 45639 >seq60 Length=1285956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146060 ACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGA 146119 || ||||||||||||| ||||| || || || || || | | | || | |||| |||| Sbjct 692798 ACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATGTTGGAGGTGT 692857 Query 146120 ACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACG 146179 ||||||| || |||||||||| || || ||||||| || | || || |||||| | Sbjct 692858 ACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAG 692917 Query 146180 CCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||| ||||| | ||| | || ||||| Sbjct 692918 CCAGCAGCAGACTGTTGCGAACACCGTG 692945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500009479920