Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq60 214 2e-50
seq58 82.4 9e-11
>seq60
Length=1285956
Score = 214 bits (236), Expect = 2e-50
Identities = 859/1337 (64%), Gaps = 33/1337 (2%)
Strand=Plus/Plus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
|||||||||| ||||| |||||||||||||| ||||| || | || || | || |
Sbjct 692842 TAGATGTTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTG 692901
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| ||||||||||| |||| || || |||||||| | ||| | | || | |||
Sbjct 692902 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCC 692961
Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082
|| ||| |||||||| || | | | || | | |||||| |||||||| |||
Sbjct 692962 TTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGG 693021
Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142
||||| || || | || || |||||| | || || | ||||| ||| || |
Sbjct 693022 ATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATC 693081
Query 116143 TC---GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 116199
|| |||| || | || || ||||| || || ||||| || || | ||||
Sbjct 693082 TCCACGGAGGCCGAC---AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGC 693138
Query 116200 GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACC 116258
|| |||||| |||| ||||| | | || || | | || |||| || |||||
Sbjct 693139 TCCCGAGCCTCGGCGGACTCAAAGGGCATGCG-CAGAGCGAGGAAAGCATCAGCCAGACC 693197
Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CAC 116315
|| ||||| | || || ||||| || | ||| || || ||||| ||| |||
Sbjct 693198 CTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC---CTCGGGCAC 693254
Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375
||| || || ||| || | | || || || | || ||| | |||| ||
Sbjct 693255 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 693314
Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435
|| ||||| || | ||| | || | | | | ||||| || || ||||
Sbjct 693315 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACATAGGCGGGCAGAGCGAG 693374
Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495
|| ||||| || ||||||| |||||| | | |||||| || || || || ||
Sbjct 693375 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCA 693434
Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555
|| || || || |||||| |||| |||||| || || ||| |||||| ||
Sbjct 693435 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTC 693494
Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614
|||||| ||||| | || | || ||||| || || | || ||| || || | ||| |
Sbjct 693495 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAG 693554
Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGG---CTCGCCCCTCCTCCTCGTACTTTGTGTAGA 116671
| || | | || | ||| ||| | || ||||| |||||||||| ||| |
Sbjct 693555 CTTCTGAGCCTTGA----TGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACA 693610
Query 116672 GGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAG 116730
||||||| ||||| || || ||| || | || || || || | || || |
Sbjct 693611 GGGCCTCGAACTCCTCGCCGT-AGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATC 693669
Query 116731 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790
|||| ||| | | || ||| || |||||||||||||| || |||||||| || |||
Sbjct 693670 AGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGAGCC 693729
Query 116791 GAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850
||| | ||| | ||| | || || | || || || |||| |||| ||
Sbjct 693730 AGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGATCCATGAAC 693789
Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA--- 116907
|| | | ||| ||||||||||| || || || | || | | || |||
Sbjct 693790 TCGAACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTG 693849
Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967
||| |||||| ||||| | ||| || ||| || || |||||||| || |||||||||
Sbjct 693850 CCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATACCA 693909
Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027
| || |||||| || || |||| ||| | || | || | ||||| |
Sbjct 693910 TTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGGTGGACATTG 693969
Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087
| |||||| || || ||| ||| ||||| ||||| | |||| || | |||||
Sbjct 693970 AGACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATA 694029
Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT-GG 117146
|| || || |||| |||| | | | |||||||| ||| | || ||||| ||
Sbjct 694030 CCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCTG-GGCCTGCGG 694088
Query 117147 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTA 117204
|||||||||||||||||||| || | || ||| ||| | | |||| |||||||
Sbjct 694089 GGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACATCAAG 694146
Query 117205 TCGTAGGTCTCCAAGAC 117221
| ||||||||| | |||
Sbjct 694147 TTGTAGGTCTCAATGAC 694163
>seq58
Length=769140
Score = 82.4 bits (90), Expect = 9e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| |||||||||||||| ||||| || || || |||||| ||| || ||||| | ||
Sbjct 628186 GTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCC 628127
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| |||| | || | || ||||||||| ||||| ||
Sbjct 628126 GCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGGC 628067
Query 127651 CGCGAACGCAAATAGACGCT 127670
|| || |||| || ||||
Sbjct 628066 GGCAAAGGCAACCAGGCGCT 628047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506180044280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |