Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq101 143 6e-29 seq79 111 4e-19 >seq101 Length=737149 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||| |||| ||||||||| | | ||| | ||||| Sbjct 590429 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 590370 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || || |||||||||||||| || || || ||| Sbjct 590369 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 590310 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| || | ||| || | | ||| || |||||||| |||||| Sbjct 590309 TGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTC 590250 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| ||||| || || || Sbjct 590249 TTTCCCGTCAGAGTCTTCACGAAGATCTG 590221 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 590201 AGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 590142 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| |||||||||||||||||||| ||||| || || || ||| Sbjct 590141 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCC 590082 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||| || | | || || |||| ||||| ||| Sbjct 590081 TGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTC 590022 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| || Sbjct 590021 TTGCCAGTCAGGGTCTTGACGAAAATCTG 589993 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||| || |||| ||||||||||| || || | ||||| Sbjct 589973 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCC 589914 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || |||||||| |||||| ||| || || ||| Sbjct 589913 TCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTATCC 589854 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| || || | | || || || | ||||| ||| Sbjct 589853 TGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACCTCGAGGGTGATGGTC 589794 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 589793 TTGCCGGTGAGGGTCTTGACGAAGATCTG 589765 >seq79 Length=2610973 Score = 111 bits (122), Expect = 4e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||||| || ||||| ||||| || |||||||| || || || | Sbjct 579498 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 579439 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | |||||||| |||||||| ||| || || ||||| ||||| ||| ||| | Sbjct 579438 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 579379 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | ||||| ||||| || |||||||| || || | Sbjct 579378 CGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGA 579319 Query 199620 A 199620 | Sbjct 579318 A 579318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919591043911