Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq101 143 6e-29
seq79 111 4e-19
>seq101
Length=737149
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||||||||| |||||| |||| ||||||||| | | ||| | |||||
Sbjct 590429 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 590370
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||| || || |||||||||||||| || || || |||
Sbjct 590369 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 590310
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| || | ||| || | | ||| || |||||||| ||||||
Sbjct 590309 TGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTC 590250
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| ||||| ||||| || || ||
Sbjct 590249 TTTCCCGTCAGAGTCTTCACGAAGATCTG 590221
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || |||||||| |||| ||||||||| | || || | |||||
Sbjct 590201 AGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 590142
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||| |||||||||||||||||||| ||||| || || || |||
Sbjct 590141 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCC 590082
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||||| |||| ||| || | | || || |||| ||||| |||
Sbjct 590081 TGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTC 590022
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || ||||| ||
Sbjct 590021 TTGCCAGTCAGGGTCTTGACGAAAATCTG 589993
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || ||||| || |||| ||||||||||| || || | |||||
Sbjct 589973 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCC 589914
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || || ||||| || |||||||| |||||| ||| || || |||
Sbjct 589913 TCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTATCC 589854
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| || || | | || || || | ||||| |||
Sbjct 589853 TGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACCTCGAGGGTGATGGTC 589794
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || || ||
Sbjct 589793 TTGCCGGTGAGGGTCTTGACGAAGATCTG 589765
>seq79
Length=2610973
Score = 111 bits (122), Expect = 4e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||||| || ||||| ||||| || |||||||| || || || |
Sbjct 579498 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 579439
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| |||||||| |||||||| ||| || || ||||| ||||| ||| ||| |
Sbjct 579438 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 579379
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| |||||| | | || || || | ||||| ||||| || |||||||| || || |
Sbjct 579378 CGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGA 579319
Query 199620 A 199620
|
Sbjct 579318 A 579318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178919591043911
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |