Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq101 143 3e-29
seq94 113 5e-20
seq79 89.7 6e-13
>seq101
Length=737149
Score = 143 bits (158), Expect = 3e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | || |||||||| ||||| ||||||||||| |||||||| | || |||
Sbjct 590426 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 590367
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| |||| |||||||||||| | || | || |||||| |||
Sbjct 590366 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGA 590307
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| ||| | | | | || || |||||||| |||| ||| || || ||
Sbjct 590306 ATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTCTTT 590247
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||||| || || || ||||| |||||
Sbjct 590246 CCCGTCAGAGTCTTCACGAAGATCTGCAT 590218
Score = 113 bits (124), Expect = 5e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || |||||| ||||| |||||||| || || ||||| | || ||
Sbjct 590199 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 590140
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||| || ||||| || | |||||||| || | || | || |||||| |||
Sbjct 590139 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCCTG 590080
Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562
||||||| ||| | ||| | | | || || ||| || || |||| |||||||| |
Sbjct 590079 GATCTTCGACTTCA-CGTTGTCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTCT 590021
Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||| || || || || || |||||
Sbjct 590020 TGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990
Score = 111 bits (122), Expect = 2e-19
Identities = 94/116 (81%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || |||||||||||||| ||||| || |||| || ||||||||||| |||||
Sbjct 589725 CTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAA 589666
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||| |||||| ||||| | || | || |||||||||| ||||||| |||||
Sbjct 589665 GATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA 589610
Score = 111 bits (122), Expect = 2e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| |||| || ||| || ||||| |||||||| || || ||||| |
Sbjct 589977 ACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 589918
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| || || || | ||||||||| || | || | || ||||||
Sbjct 589917 ATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGAATGCCCTCCTT 589858
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| ||||||| ||||| | | | || || ||| ||||| || | |||||
Sbjct 589857 ATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACCTCGAGGGTGAT 589798
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || || || || || ||||| |||||
Sbjct 589797 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762
>seq94
Length=69539
Score = 113 bits (124), Expect = 5e-20
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| | || || ||||||||||| || || |
Sbjct 45450 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 45509
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| |||||| ||||| | || | || |||||||||| ||||||| ||||| |
Sbjct 45510 TCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 45569
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | || || || ||||| || | ||||| || |||||||| || || || || |
Sbjct 45570 CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGA 45629
Query 46584 AGATTTGCAT 46593
| || |||||
Sbjct 45630 AAATCTGCAT 45639
>seq79
Length=2610973
Score = 89.7 bits (98), Expect = 6e-13
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| |||||||| || ||||| || | || || ||||||||||| || || |
Sbjct 579498 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 579439
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
| | ||||| ||||| | || | || |||||||||| |||||| ||||| ||| |
Sbjct 579438 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 579380
Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| || ||||| || | ||||| || || || || || || || ||
Sbjct 579379 TCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACG 579320
Query 46583 AAG 46585
|||
Sbjct 579319 AAG 579317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565237460291160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |