Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq58 352 3e-92 seq101 107 2e-18 seq94 104 2e-17 seq79 91.5 1e-13 >seq58 Length=769140 Score = 352 bits (390), Expect = 3e-92 Identities = 612/869 (70%), Gaps = 37/869 (4%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || ||||| || ||||| || || || || || || | Sbjct 628504 CATGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 628445 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707 || || ||| | ||| || || |||||||||| | ||||| ||| | |||| Sbjct 628444 CAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCC 628385 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTC 132764 || || |||| ||||| | |||||| |||||||||||||| ||| ||| ||| | Sbjct 628384 GAG-AG--CGACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGC 628328 Query 132765 GCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGG 132823 | || | |||||||| |||| ||||| || ||||||| || |||||||||| Sbjct 628327 G---TTCATGCCCAGCAGGGCGCAG-GGCAGAGCCTCGGTGATGAACTCCTGCTCGATGG 628272 Query 132824 CGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCT 132883 | || || ||||||| |||| | | | || ||| || || ||| | || Sbjct 628271 CCACGGCATCGGTGATGATTCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTGGG 628212 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 ||| | || ||| || |||||| |||| |||||||| | || || || |||||| Sbjct 628211 AGAAGAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGG 628152 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| |||| ||||||||| | |||||| || |||| ||| || || || ||| | || Sbjct 628151 AGAAGGTCAGGCCGGGCATCATGCCGCGCTTCTTGACCCAGAAGAT--CGACGAGAAGGC 628094 Query 133004 -CCGAA-AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 ||| ||||||| |||||||||||| || || || |||||||||| |||| | | | Sbjct 628093 ACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGA 628034 Query 133062 TTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATC 133119 || ||| |||| |||||||| | ||||| |||||||| | || ||| || || Sbjct 628033 CTCCTTGTCCTGG--ATCCAGCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATG 627976 Query 133120 GTTTCGATGGCGTTCAACA--AACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGT 133174 || || |||||||| || | |||| || | || | |||| | | |||||||| Sbjct 627975 GTGTCAATGGCGTTGAAGAGGAACG-AG---CGCTGC-GAGGGCTCCTTGATGTAGGTGT 627921 Query 133175 CGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAA 133234 | ||||| ||| || | || ||||| | ||||||||| ||| || |||||||| | Sbjct 627920 CAATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGA 627861 Query 133235 AGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTG 133293 |||| || ||||| ||||||||| || | || ||||||||||||||| || |||||| Sbjct 627860 AGCAGCGGGCCTCAGGCACCTGCACCTCG-GCGCTGAAACGCTCGACCAGGTTCTCGTTG 627802 Query 133294 ACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG 133353 || |||||||| |||||||| ||||| || | |||| |||||| ||||||| Sbjct 627801 ACAATGCCGTCAGACGCGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCA 627742 Query 133354 TCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTC 133410 ||||||| ||| | |||||| | | |||||||||||||| | ||||||| | ||| Sbjct 627741 TCGTTCAGGCGGTTGTTCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTC 627682 Query 133411 CAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || ||||| ||||| || || |||||||| Sbjct 627681 CAGAACGAGGCCTCAGCCTTCTTGTACAT 627653 >seq101 Length=737149 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || |||||| | | Sbjct 589990 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 590049 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || |||| || || ||||| || ||| | || || Sbjct 590050 GATACCATCGACAACG-TGAAGTCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGATCA 590108 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || || | |||||||| |||||||| Sbjct 590109 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGTCGGACTACAA 590168 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || ||||| |||||||| || Sbjct 590169 CATCCAGAAGGAGTCCACCCTGCACTTGGTGCTCCG 590204 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | | Sbjct 589762 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 589821 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || || |||| || || ||||| ||||| | || || Sbjct 589822 GATACTATCGATAACG-TCAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCA 589880 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | |||||||| |||||||| Sbjct 589881 GCAGCGCCTAATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGACTACAA 589940 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || || | || ||||| |||||||| ||| Sbjct 589941 CATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGT 589977 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || || || | || || || || | Sbjct 590218 ATGCAGATCTTCGTGAAGACTCTGACGGGAAAGACGATTACGTTGGAAGTGGAATCCTCG 590277 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | || || ||||| || ||| | ||||| Sbjct 590278 GATACCATTGATAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCA 590336 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| ||||| ||||| || || | ||||| || ||||||||| Sbjct 590337 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAA 590396 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| ||| || || || |||| || || || | || |||| Sbjct 590397 CATCCAGAAGGAGAGC-ACTCTCCACCTGGTCCTCCGCCTGCGCGGTGGCC 590446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | ||||||||||| || || | ||| ||||| Sbjct 589618 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTCGCTGGCAAG 589677 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| || || ||| ||||||||| || || ||||| | || || ||| Sbjct 589678 CAGCTTGAGGACGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCAT 589737 Query 38448 TTGGTGCTGCG 38458 | || || || Sbjct 589738 CTCGTCCTCCG 589748 >seq94 Length=69539 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || |||||| | || || ||| || | Sbjct 45639 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 45580 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || || |||| ||||| ||||| || ||| | |||||| Sbjct 45579 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAA 45520 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| || ||||| ||||| || || | |||||||| |||||||||| Sbjct 45519 CAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 45460 Query 38424 ATCCAAAAGG 38433 ||||| |||| Sbjct 45459 ATCCAGAAGG 45450 >seq79 Length=2610973 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||| || || || |||||| | || || ||| | | |||| | | Sbjct 579318 TTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCATC 579377 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 579378 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCT 579436 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 |||| || ||||| ||||| || || | || || || |||||||||||||| || Sbjct 579437 TATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 579496 Query 38432 GG 38433 || Sbjct 579497 GG 579498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171968462720