Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq58 352 3e-92
seq101 107 2e-18
seq94 104 2e-17
seq79 91.5 1e-13
>seq58
Length=769140
Score = 352 bits (390), Expect = 3e-92
Identities = 612/869 (70%), Gaps = 37/869 (4%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || ||||| || ||||| || || || || || || |
Sbjct 628504 CATGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 628445
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707
|| || ||| | ||| || || |||||||||| | ||||| ||| | ||||
Sbjct 628444 CAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCC 628385
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTC 132764
|| || |||| ||||| | |||||| |||||||||||||| ||| ||| ||| |
Sbjct 628384 GAG-AG--CGACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGC 628328
Query 132765 GCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGG 132823
| || | |||||||| |||| ||||| || ||||||| || ||||||||||
Sbjct 628327 G---TTCATGCCCAGCAGGGCGCAG-GGCAGAGCCTCGGTGATGAACTCCTGCTCGATGG 628272
Query 132824 CGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCT 132883
| || || ||||||| |||| | | | || ||| || || ||| | ||
Sbjct 628271 CCACGGCATCGGTGATGATTCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTGGG 628212
Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943
||| | || ||| || |||||| |||| |||||||| | || || || ||||||
Sbjct 628211 AGAAGAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGG 628152
Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003
||| |||| ||||||||| | |||||| || |||| ||| || || || ||| | ||
Sbjct 628151 AGAAGGTCAGGCCGGGCATCATGCCGCGCTTCTTGACCCAGAAGAT--CGACGAGAAGGC 628094
Query 133004 -CCGAA-AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061
||| ||||||| |||||||||||| || || || |||||||||| |||| | | |
Sbjct 628093 ACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGA 628034
Query 133062 TTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATC 133119
|| ||| |||| |||||||| | ||||| |||||||| | || ||| || ||
Sbjct 628033 CTCCTTGTCCTGG--ATCCAGCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATG 627976
Query 133120 GTTTCGATGGCGTTCAACA--AACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGT 133174
|| || |||||||| || | |||| || | || | |||| | | ||||||||
Sbjct 627975 GTGTCAATGGCGTTGAAGAGGAACG-AG---CGCTGC-GAGGGCTCCTTGATGTAGGTGT 627921
Query 133175 CGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAA 133234
| ||||| ||| || | || ||||| | ||||||||| ||| || |||||||| |
Sbjct 627920 CAATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGA 627861
Query 133235 AGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTG 133293
|||| || ||||| ||||||||| || | || ||||||||||||||| || ||||||
Sbjct 627860 AGCAGCGGGCCTCAGGCACCTGCACCTCG-GCGCTGAAACGCTCGACCAGGTTCTCGTTG 627802
Query 133294 ACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG 133353
|| |||||||| |||||||| ||||| || | |||| |||||| |||||||
Sbjct 627801 ACAATGCCGTCAGACGCGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCA 627742
Query 133354 TCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTC 133410
||||||| ||| | |||||| | | |||||||||||||| | ||||||| | |||
Sbjct 627741 TCGTTCAGGCGGTTGTTCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTC 627682
Query 133411 CAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| ||||| ||||| || || ||||||||
Sbjct 627681 CAGAACGAGGCCTCAGCCTTCTTGTACAT 627653
>seq101
Length=737149
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| |||||||| | || |||||| | |
Sbjct 589990 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 590049
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || |||| || || ||||| || ||| | || ||
Sbjct 590050 GATACCATCGACAACG-TGAAGTCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGATCA 590108
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| || || ||||| || || | |||||||| ||||||||
Sbjct 590109 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGTCGGACTACAA 590168
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || ||||| |||||||| ||
Sbjct 590169 CATCCAGAAGGAGTCCACCCTGCACTTGGTGCTCCG 590204
Score = 105 bits (116), Expect = 7e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | |
Sbjct 589762 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 589821
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | |||| | || || |||| || || ||||| ||||| | || ||
Sbjct 589822 GATACTATCGATAACG-TCAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCA 589880
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || ||||| ||||| || || | |||||||| ||||||||
Sbjct 589881 GCAGCGCCTAATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGACTACAA 589940
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| || || | || ||||| |||||||| |||
Sbjct 589941 CATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGT 589977
Score = 87.8 bits (96), Expect = 2e-12
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || ||||| || || || || | || || || || |
Sbjct 590218 ATGCAGATCTTCGTGAAGACTCTGACGGGAAAGACGATTACGTTGGAAGTGGAATCCTCG 590277
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || || | || || ||||| || ||| | |||||
Sbjct 590278 GATACCATTGATAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCA 590336
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||| ||||| ||||| || || | ||||| || |||||||||
Sbjct 590337 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAA 590396
Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| ||||| ||| || || || |||| || || || | || ||||
Sbjct 590397 CATCCAGAAGGAGAGC-ACTCTCCACCTGGTCCTCCGCCTGCGCGGTGGCC 590446
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || ||| | ||||||||||| || || | ||| |||||
Sbjct 589618 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTCGCTGGCAAG 589677
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| || || ||| ||||||||| || || ||||| | || || |||
Sbjct 589678 CAGCTTGAGGACGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCAT 589737
Query 38448 TTGGTGCTGCG 38458
| || || ||
Sbjct 589738 CTCGTCCTCCG 589748
>seq94
Length=69539
Score = 104 bits (114), Expect = 2e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || |||||||| || |||||| | || || ||| || |
Sbjct 45639 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 45580
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | || || |||| ||||| ||||| || ||| | ||||||
Sbjct 45579 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAA 45520
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| || ||||| ||||| || || | |||||||| ||||||||||
Sbjct 45519 CAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 45460
Query 38424 ATCCAAAAGG 38433
||||| ||||
Sbjct 45459 ATCCAGAAGG 45450
>seq79
Length=2610973
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/182 (72%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||| || || || |||||| | || || ||| | | |||| | |
Sbjct 579318 TTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCATC 579377
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| ||||| |||||| | ||||||||||| ||
Sbjct 579378 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCT 579436
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|||| || ||||| ||||| || || | || || || |||||||||||||| ||
Sbjct 579437 TATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 579496
Query 38432 GG 38433
||
Sbjct 579497 GG 579498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171968462720
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