Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq52 352 4e-92 seq63 95.1 2e-14 >seq52 Length=911667 Score = 352 bits (390), Expect = 4e-92 Identities = 865/1308 (66%), Gaps = 29/1308 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | || ||| || ||||| || || || Sbjct 805213 TCATCCTCCTCCTTGTACTTCTCGGCCTCGTTGAGCATGCGCTCGATGTCCTCCTTGGAG 805272 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||| || || | | |||| || | Sbjct 805273 AGACGGCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTGCCGGTGCCCTTCTCGAGA 805332 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| ||||| || ||||||| |||||| | || | ||| || || | Sbjct 805333 GCAGACACGTTCATGATACCGTTGGCATCAAGATCGAAGGTAACCTCAATCTGGGGAACA 805392 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| || || || || | || || | || | | |||| ||| | Sbjct 805393 CCGCGGGGAGCGGGGGGGATGCCGGTAAGCTCGAACTTGCCCATCAGGTTGTTGTCCTTG 805452 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || ||||| || || || | || ||| | || || || || Sbjct 805453 GTGCGCTGGCGCTCACCCTCGTAAACCTGGATGAGCACACCGGGCTGGTTGTCGGAGAAG 805512 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | | ||||| | || || || || || | || || | | |||| Sbjct 805513 GTCGAGAAAGTCTCGGACTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCTTGGTC 805572 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| ||| |||| || || || || || | ||||| ||| | ||| Sbjct 805573 ATCATACCACCGGCAGTCTCGATACCGAGCGAGAGCGGGGCAACGTC---GAGCAGAAGG 805629 Query 6989 TCTTGAACAGATTCGTTCCCT-----------TCACCCGTTAAGATGGCGGCTTGGACCG 7037 | | ||||| | || || || | | |||||| || ||||| | Sbjct 805630 -----ATCTCCTTCGTGCTCTGGTTGGAGGTATCGCCAGACAGGATGGCAGCCTGGACAG 805684 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 || ||||| || || |||||||||||||| || | || || | || || ||||| | Sbjct 805685 CAGCGCCGTAGGCAACGGCCTCATCGGGGTTGATGCTCTTGTTGGGCTCCTTGCCGTTGA 805744 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | | ||| | || | || || || ||||| || || |||||||| || | |||| Sbjct 805745 AGTGATCGCTGATCAGCTTCTGGATCTTGGGGATGCGGGTGGATCCACCAACGAGCACGA 805804 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTC--TC--GAAGTGTTTTTTCGACAGGT 7213 | || | ||| | || || |||||||| | || || || | | | |||| || Sbjct 805805 TCTCGTGCACCTGGGACTTGTCGATCTTGGCATCGGTCAGGACGCGGT----CGACGGGC 805860 Query 7214 TCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGAT 7273 | || ||||| | ||| || || || || ||||| || || ||||| || Sbjct 805861 TGGATGGTCGAGCGGAAGAGATCCTGGCAGAGCTCTTCGAAACGAGCGCGAGTAATCGAA 805920 Query 7274 GTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAA 7333 || ||||| |||| || || || | ||||||||| || || | || || || | ||| Sbjct 805921 GTGTAGAAGTCAATACCCTCATACAGCGAATCAATCTCGATCGAGGTCTGAGCAGACGAC 805980 Query 7334 GATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTA 7393 || | || ||||| || ||||| || || || || | ||| || || ||||| | ||| Sbjct 805981 GAAAGGGTACGCTTGGCACGCTCGCAAGCAGTGCGGAGACGGCGGAGAGCACGAGCGTTC 806040 Query 7394 CCGGAAATATCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTGTCGAAGGAGTCT 7452 ||| | ||| ||||| || || || || ||||| |||| |||||| | | || | Sbjct 806041 GAGGACAGATCCTTCTTGTGCTTGCGCTTGAACTCGTTCAC-GAAGTGCTGGACCAGACG 806099 Query 7453 CGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT 7512 ||||||||| |||||||||| || || || || ||||||| ||||| || ||||| Sbjct 806100 GTGATCGAAATCCTCACCACCCAGATGGGTGTCACCAGCGGTCGACTTGACCTCGAAGAT 806159 Query 7513 ACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAG 7572 ||| | |||||| | | | ||| ||||| || |||||||| || || || || ||||| Sbjct 806160 ACCGTCCTCAATGGTAAGGAGCGATACATCGAAAGTACCACCGCCAAGATCGAAGATGAG 806219 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 ||||| ||| | || ||||||||||| || || || || || || || || || Sbjct 806220 AACGTTGCGCTCGCCCTCGACCTTCTTATCGAGGCCATAGGCAATGGCGGCAGCGGTAGG 806279 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || ||||| ||| ||||||||| ||||| | ||||| || || || || Sbjct 806280 CTCGTTGATGATACGGAGAACGTTCAGGCCGGCAATGAGACCAGCATCCTTGGTGGCCTG 806339 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || ||||| ||||| || || || || ||||| |||| ||||| | | || Sbjct 806340 ACGCTGAGAGTCGTTGAAGTAAGCGGGCACGGTCACGACGGCGTTAGTGACGGTGGTTCC 806399 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||| ||||| || ||| | || ||||||||| || ||||| || || ||||| |||| Sbjct 806400 GAGGTACGACTCGGCGGTCTCACGCATTTTGGTCAGGACCATAGACGAGATCTCCTCAGG 806459 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 | |||||| || || || || || || || |||||||| ||||| || Sbjct 806460 GGTAAACTGCTTGGTCTCGCCCTTGAACTCGACTTCAATGATGGGCTT 806507 >seq63 Length=759387 Score = 95.1 bits (104), Expect = 2e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| || |||||||| || | || || || || || || || | || ||| ||| ||| Sbjct 509307 CTTCTCCAGACCGTAGGCCAGGGCAGCGGCAGTGGGCTCGTTGACAACACGCAGAACGTT 509248 Query 7657 CAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 ||||| ||||| | |||| |||| || || || || || ||||||||||| ||||||| Sbjct 509247 AAGGCCGGCAATT-TGGCCGGCATCCTTGGTGGCCTGACGCTGCGAATCGTTGAAGTAGG 509189 Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775 | || || || ||||| |||| | |||| ||| ||||| | || ||| | || | Sbjct 509188 CAGGAACGGTGACGACGGCGTTCTTGACGGGCTTGGACAGATAGGCCTCGGCGGTCTCCT 509129 Query 7776 TCATTTTGGTAAGAAC 7791 |||| ||| | || || Sbjct 509128 TCATCTTGTTCAGGAC 509113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131744091720