Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq60 260 2e-64 seq58 91.5 2e-13 >seq60 Length=1285956 Score = 260 bits (288), Expect = 2e-64 Identities = 904/1395 (65%), Gaps = 33/1395 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTC 111667 ||| ||| ||||| ||||||| || || | || ||| |||||| || | | || Sbjct 694221 CCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATC--TGGGGA-GACAACGTCGAGCG 694165 Query 111668 TGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCT 111727 || | ||||| ||| || ||||||| | | |||| ||| || | || ||||| Sbjct 694164 CGTCATTGAGACCTACAACTTGATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACCCT 694105 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 ||||||||||||||| || |||| | || || ||||| ||| | ||||| Sbjct 694104 CTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTTGATATAAAGGA 694045 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || || | || || || | ||| |||| || ||| ||||| ||| ||| Sbjct 694044 TGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGC 693985 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 ||| || || || | | |||| | || | || | ||| |||| || || Sbjct 693984 TGGCGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACTGGTTCTTATATTGCCGGAAC 693925 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 ||||| || ||||||| || || |||||||| || || ||| ||| |||||||| Sbjct 693924 CAATGGCACGTCCAATGGTATCATCCCCATGCTTCGAGTGTTCAACAACACCGCGCGCTA 693865 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 ||| |||| | ||| ||| | | || | | || ||||||| ||||| || Sbjct 693864 TGTTGACCAGGGTGGCAACAAGCGCCCC---GGCGCCTTTGCCATCTATCTCGAGCCGTG 693808 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 |||||| ||| | | |||||| | || |||| ||||| || | ||||||| || Sbjct 693807 GCACGCCGATGTGTTCGAGTTCATGGATCTGCGCAAGAACCATGGAAAGGAGGAGGTCCG 693748 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 | | ||| | ||| ||||| ||||| || ||||||||||||||| | || ||| | Sbjct 693747 CGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAA 693688 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || | | | ||| |||| | || || || || |||||||| |||| | || Sbjct 693687 GAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGG 693628 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACG 112259 |||||||| || ||||| ||| |||||||||| || ||| ||| || ||| Sbjct 693627 CGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTC--GCGGTCGCAAGACC 693570 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | | || | || | ||||| | || || ||| || |||| |||||||| || | || Sbjct 693569 AT-CAAGGCTCAGAAGCTGTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCC 693511 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||| ||||| ||| |||||||| ||||| || || ||||| ||||| || Sbjct 693510 CTTCATGCTGTACAAGGACCACTGTAACCGCAAGAGCAACCAGAAGAACCTGGGTACCAT 693451 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 || |||||||| || || || ||| | || | | |||||| |||||| Sbjct 693450 TCGCAGCTCCAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTGT 693391 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATTT 112496 ||| ||||| || || ||||||| ||| ||||| || | | | |||| | | | | Sbjct 693390 GTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTATGTTGA-CTACA-ACAAGGGCGTGTAT 693333 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 || | ||| || || ||||| || || | || ||||| ||| | | ||| Sbjct 693332 GACTTTGAGAAGCTGCACGAGGTCACCATGGTGGTTGTCCGCAACCTGAACCGCATCATT 693273 Query 112557 GATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 112613 ||| || |||||||| ||| ||||| || || ||| | ||||| || Sbjct 693272 GATGTCAACCACTACCCCGTGCCCGAG---GCTCGCAACAGCAACATGCGCCACCGCCCC 693216 Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGA 112672 || ||| | ||||| || ||||| || |||| ||| | || || ||| | ||||| Sbjct 693215 ATCGGTGTTGGTGTTCAGGGTCTGGCTGATGCTTTCCTCGCTCTG-CGCATGCCCTTTGA 693157 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 |||| ||| || ||| | || || || || ||||| || || ||||| ||||| Sbjct 693156 GTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGACCATCTACCACGCTGCTCT 693097 Query 112733 TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792 ||| |||| | || ||| || || | || |||| |||||| ||||| Sbjct 693096 GTCGGCCTCCGTGGAGATCGCCAAGGAGGAGGGAACCTACTCCACCTATGAGGGCTCTCC 693037 Query 112793 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 112852 | || || || | || || ||||| |||||| | | || ||| | || || Sbjct 693036 CGTCTCTCAGGGTATCCTGCAGTTTGACATGTGGAATGTCAAGCCCACCGACCTCTGGGA 692977 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 |||||| || ||||| | |||||| | ||| |||| |||||||| || |||| Sbjct 692976 CTGGGATAGCCTGAAGGAGCAGATCAAGCTTCACGGTGTTCGCAACAGTCTGCTGCTGGC 692917 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || ||| ||| | || || | || || || || |||||||| || || Sbjct 692916 TCCCATGCCCACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGCTTTGAGCCGTA 692857 Query 112973 CACGACGAACATCTA 112987 ||| | |||||||| Sbjct 692856 CACCTCCAACATCTA 692842 >seq58 Length=769140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 102181 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 102240 |||| || | || ||||| || ||||| ||||||||| ||| |||||| | | Sbjct 628047 AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGA 628106 Query 102241 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 102300 | | ||| |||||||||| || | ||||| || || ||||||||||||||| |||| Sbjct 628107 TCTTCTGGGTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCT 628166 Query 102301 CTCGTGACGAGGGACTCCAC 102320 | ||||||||||| || ||| Sbjct 628167 CGCGTGACGAGGGTCTGCAC 628186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741368015760