Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq60 194 2e-44
seq55 91.5 2e-13
>seq60
Length=1285956
Score = 194 bits (214), Expect = 2e-44
Identities = 1086/1721 (63%), Gaps = 43/1721 (2%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||||| ||||| ||||| || ||||| |||||| || || ||||| | | | |
Sbjct 692589 GTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGGTCGGCTGCCATCTGCACAACAGT 692648
Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619
||| |||||||||||| |||||||||| | |||||| ||| | || ||| |
Sbjct 692649 GCGCTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGCTGGC 692708
Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679
||||| || || ||||| | | ||| | | ||||||| | |||||| ||
Sbjct 692709 AATGTTCTGGATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAG 692768
Query 109680 ACCGACCTTTTTGAGATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCAG 109735
|| | | ||||||| |||| | | ||||||||| || || ||||
Sbjct 692769 GCCAAGGTCGACGAGATCGCGGAGCAACCA----CGGGTTGACCACCTGGAACTCTCCAG 692824
Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795
|||| || || |||||||||| | ||||| || || || ||||| |||||||| |
Sbjct 692825 CAAGCACACGGCGCTGGTAGATGTTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAA 692884
Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT 109855
| || || | || || |||||||||||||||| || |||||||| || | ||| |
Sbjct 692885 GAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGT 692944
Query 109856 TCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCAC 109915
||| | | |||| || ||||| || | | | | | ||
Sbjct 692945 GAAGCTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTC------GGTGGGCTTGA 692998
Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975
||| |||||| || || || | ||||| || | ||||| |||| | | ||
Sbjct 692999 CATTCCACATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGT 693058
Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035
| | ||||| ||| ||| | ||| || ||| || || || || || || ||||
Sbjct 693059 AGGTTCCCTCCTCCTTGGCGATCTCCACGGAGGCCGACAGAGCAGCGTGGTAGATGGTCT 693118
Query 110036 CAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGG-AAGACCACAAAGA 110094
| || || || |||| |||| ||| | | || ||||| | | || | ||
Sbjct 693119 CGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGA 693178
Query 110095 ATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAG 110154
||| |||| || |||||||||||||| | ||| |||||||| || |||||| |
Sbjct 693179 GGAAA-GCATCAGCCAGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTG 693237
Query 110155 CGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTC 110214
||||| |||||||| |||| || |||| || || || ||
Sbjct 693238 TTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACA 693297
Query 110215 ACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACA 110274
|| | | |||| || || || || || | || || | | | | | |||
Sbjct 693298 ACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACA 693357
Query 110275 TATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTAT 110334
|| ||| ||||| | || || || |||||||||| ||| || || |||
Sbjct 693358 TAGGCGGGCAGAGCGAGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTAC 693417
Query 110335 TCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGAT 110394
|| | || || || |||| |||||| || |||| ||||| ||||||||| ||
Sbjct 693418 TCAATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTC 693477
Query 110395 TTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTG 110454
||| ||| || ||||| || |||||| | ||| | || || || ||||| | || |
Sbjct 693478 TTGCGGTTACAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCG 693537
Query 110455 AGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCC 110511
|| ||||| | ||| | | || | || || | ||||| | || |||| || ||
Sbjct 693538 AGGATGGCATACCACAGCTTCTG-AGCCTTGATGGTCTTGCG--ACCGCGACCCTCAGCC 693594
Query 110512 TCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCC 110571
|||||||| ||||| | |||| || |||| ||||| || | |||||| |
Sbjct 693595 TCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCAC 693654
Query 110572 TTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631
| || ||| || | || | ||| | | || ||| || | ||||||||| || |||
Sbjct 693655 TCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCA 693714
Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691
|| ||||||| ||| ||| | || | | || |||| || | || ||||| |
Sbjct 693715 GGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTG 693774
Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA---CA---GCG 110745
|| || |||| || || | | ||| | |||||| || |||||||||| || |||
Sbjct 693775 CGCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCG 693834
Query 110746 ATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805
|| | ||| | | || |||||| ||||||||| || ||| ||||| || |
Sbjct 693835 CCGGGGCGCTT--GTTG-CCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGA 693891
Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA 110865
||||| || || || |||| ||| ||||| || || ||| || | | |||
Sbjct 693892 AGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCA 693951
Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTC 110924
|| || ||||| || | |||||| || || ||| ||| || || || ||
Sbjct 693952 CGGATACGGTGGACATTGAGACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTC 694011
Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984
| |||| || |||| ||||| ||||| || |||| | ||| || ||||| ||
Sbjct 694012 T-TGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGA 694070
Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044
|| | ||| | | || || || || |||||||| || || | ||||| ||| ||
Sbjct 694071 CGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AG 694128
Query 111045 ACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATA 111102
| |||| ||||||| |||||| || || | || || | | || ||
Sbjct 694129 AACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCCCAGATG 694188
Query 111103 CCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGC 111162
|||| ||||| ||||||| ||| | || || |||| | ||| || |||| ||
Sbjct 694189 CCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAA---GC 694245
Query 111163 T---GAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200
| | |||||| | ||| |||||||||| ||||||||
Sbjct 694246 TTGAGCAGGTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTA 694286
>seq55
Length=450404
Score = 91.5 bits (100), Expect = 2e-13
Identities = 275/420 (65%), Gaps = 16/420 (4%)
Strand=Plus/Minus
Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647
||| ||| |||||||| || || || | |||||||| |||| || ||||| ||||||
Sbjct 228602 TGTTGAAGCCGTCCATCTCCGTCAGGATCTGGTTGAGCGTCGCCTCGCGCTCGTCGTTGC 228543
Query 11648 AG-------GGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATG 11700
| ||| || | ||| ||| | |||| ||||| ||||| ||||||
Sbjct 228542 CGCCGCCCGGGCGGCCCGAGT-CCGTGCGCGCCCGCCCGATGGCGTCGATCTCGTCGATG 228484
Query 11701 AATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCT 11760
|| | ||| ||||| ||| || ||| |||| || || || || ||| ||
Sbjct 228483 AAGATGATGCACGGCGCGTTCTTGCGCGCCATCGCGAACAGGTCGCGCACGCGCGACGGG 228424
Query 11761 CCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATT 11819
|| || || || |||||||| ||||| | | | | || || ||||| ||| || ||
Sbjct 228423 CCCACGCCGACAAACATCTCCACGAACTCCGAGCCCGACACGCTGAA-GAACGGCACCCC 228365
Query 11820 AGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAG 11879
||||| || || |||| || || || ||||| || || || || | || | ||
Sbjct 228364 GGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCGGTTCCCGGCGGGCCCGACAG 228305
Query 11880 AAGGGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAG 11936
| ||||| || ||||||||||| || | |||| | ||| |||||||| ||
Sbjct 228304 GATCGCGCCGCGCGGGATCTTGGCGCCCAGCCGCTCAAACT---TCTCCGGCTTCTTCAG 228248
Query 11937 GAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996
|||| ||||| |||| || || |||||| ||| || ||| | || || | |||
Sbjct 228247 GAAGCTCACAAACTCCATAACCTCTGTCTTGGCCTCGTCCATCCCCGCCACGTCCGAGAA 228188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975020827400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |