Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq60 194 2e-44 seq55 91.5 2e-13 >seq60 Length=1285956 Score = 194 bits (214), Expect = 2e-44 Identities = 1086/1721 (63%), Gaps = 43/1721 (2%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| ||||| || ||||| |||||| || || ||||| | | | | Sbjct 692589 GTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGGTCGGCTGCCATCTGCACAACAGT 692648 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| |||||||||||| |||||||||| | |||||| ||| | || ||| | Sbjct 692649 GCGCTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGCTGGC 692708 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679 ||||| || || ||||| | | ||| | | ||||||| | |||||| || Sbjct 692709 AATGTTCTGGATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAG 692768 Query 109680 ACCGACCTTTTTGAGATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCAG 109735 || | | ||||||| |||| | | ||||||||| || || |||| Sbjct 692769 GCCAAGGTCGACGAGATCGCGGAGCAACCA----CGGGTTGACCACCTGGAACTCTCCAG 692824 Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795 |||| || || |||||||||| | ||||| || || || ||||| |||||||| | Sbjct 692825 CAAGCACACGGCGCTGGTAGATGTTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAA 692884 Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT 109855 | || || | || || |||||||||||||||| || |||||||| || | ||| | Sbjct 692885 GAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGT 692944 Query 109856 TCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCAC 109915 ||| | | |||| || ||||| || | | | | | || Sbjct 692945 GAAGCTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTC------GGTGGGCTTGA 692998 Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975 ||| |||||| || || || | ||||| || | ||||| |||| | | || Sbjct 692999 CATTCCACATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGT 693058 Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035 | | ||||| ||| ||| | ||| || ||| || || || || || || |||| Sbjct 693059 AGGTTCCCTCCTCCTTGGCGATCTCCACGGAGGCCGACAGAGCAGCGTGGTAGATGGTCT 693118 Query 110036 CAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGG-AAGACCACAAAGA 110094 | || || || |||| |||| ||| | | || ||||| | | || | || Sbjct 693119 CGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGA 693178 Query 110095 ATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAG 110154 ||| |||| || |||||||||||||| | ||| |||||||| || |||||| | Sbjct 693179 GGAAA-GCATCAGCCAGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTG 693237 Query 110155 CGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTC 110214 ||||| |||||||| |||| || |||| || || || || Sbjct 693238 TTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACA 693297 Query 110215 ACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACA 110274 || | | |||| || || || || || | || || | | | | | ||| Sbjct 693298 ACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACA 693357 Query 110275 TATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTAT 110334 || ||| ||||| | || || || |||||||||| ||| || || ||| Sbjct 693358 TAGGCGGGCAGAGCGAGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTAC 693417 Query 110335 TCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGAT 110394 || | || || || |||| |||||| || |||| ||||| ||||||||| || Sbjct 693418 TCAATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTC 693477 Query 110395 TTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTG 110454 ||| ||| || ||||| || |||||| | ||| | || || || ||||| | || | Sbjct 693478 TTGCGGTTACAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCG 693537 Query 110455 AGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCC 110511 || ||||| | ||| | | || | || || | ||||| | || |||| || || Sbjct 693538 AGGATGGCATACCACAGCTTCTG-AGCCTTGATGGTCTTGCG--ACCGCGACCCTCAGCC 693594 Query 110512 TCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCC 110571 |||||||| ||||| | |||| || |||| ||||| || | |||||| | Sbjct 693595 TCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCAC 693654 Query 110572 TTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631 | || ||| || | || | ||| | | || ||| || | ||||||||| || ||| Sbjct 693655 TCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCA 693714 Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691 || ||||||| ||| ||| | || | | || |||| || | || ||||| | Sbjct 693715 GGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTG 693774 Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA---CA---GCG 110745 || || |||| || || | | ||| | |||||| || |||||||||| || ||| Sbjct 693775 CGCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCG 693834 Query 110746 ATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805 || | ||| | | || |||||| ||||||||| || ||| ||||| || | Sbjct 693835 CCGGGGCGCTT--GTTG-CCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGA 693891 Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA 110865 ||||| || || || |||| ||| ||||| || || ||| || | | ||| Sbjct 693892 AGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCA 693951 Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTC 110924 || || ||||| || | |||||| || || ||| ||| || || || || Sbjct 693952 CGGATACGGTGGACATTGAGACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTC 694011 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 | |||| || |||| ||||| ||||| || |||| | ||| || ||||| || Sbjct 694012 T-TGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGA 694070 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044 || | ||| | | || || || || |||||||| || || | ||||| ||| || Sbjct 694071 CGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AG 694128 Query 111045 ACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATA 111102 | |||| ||||||| |||||| || || | || || | | || || Sbjct 694129 AACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCCCAGATG 694188 Query 111103 CCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGC 111162 |||| ||||| ||||||| ||| | || || |||| | ||| || |||| || Sbjct 694189 CCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAA---GC 694245 Query 111163 T---GAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | | |||||| | ||| |||||||||| |||||||| Sbjct 694246 TTGAGCAGGTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTA 694286 >seq55 Length=450404 Score = 91.5 bits (100), Expect = 2e-13 Identities = 275/420 (65%), Gaps = 16/420 (4%) Strand=Plus/Minus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| ||| |||||||| || || || | |||||||| |||| || ||||| |||||| Sbjct 228602 TGTTGAAGCCGTCCATCTCCGTCAGGATCTGGTTGAGCGTCGCCTCGCGCTCGTCGTTGC 228543 Query 11648 AG-------GGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATG 11700 | ||| || | ||| ||| | |||| ||||| ||||| |||||| Sbjct 228542 CGCCGCCCGGGCGGCCCGAGT-CCGTGCGCGCCCGCCCGATGGCGTCGATCTCGTCGATG 228484 Query 11701 AATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCT 11760 || | ||| ||||| ||| || ||| |||| || || || || ||| || Sbjct 228483 AAGATGATGCACGGCGCGTTCTTGCGCGCCATCGCGAACAGGTCGCGCACGCGCGACGGG 228424 Query 11761 CCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATT 11819 || || || || |||||||| ||||| | | | | || || ||||| ||| || || Sbjct 228423 CCCACGCCGACAAACATCTCCACGAACTCCGAGCCCGACACGCTGAA-GAACGGCACCCC 228365 Query 11820 AGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAG 11879 ||||| || || |||| || || || ||||| || || || || | || | || Sbjct 228364 GGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCGGTTCCCGGCGGGCCCGACAG 228305 Query 11880 AAGGGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAG 11936 | ||||| || ||||||||||| || | |||| | ||| |||||||| || Sbjct 228304 GATCGCGCCGCGCGGGATCTTGGCGCCCAGCCGCTCAAACT---TCTCCGGCTTCTTCAG 228248 Query 11937 GAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 |||| ||||| |||| || || |||||| ||| || ||| | || || | ||| Sbjct 228247 GAAGCTCACAAACTCCATAACCTCTGTCTTGGCCTCGTCCATCCCCGCCACGTCCGAGAA 228188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975020827400