Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq60 259 6e-64 >seq60 Length=1285956 Score = 259 bits (286), Expect = 6e-64 Identities = 1139/1786 (64%), Gaps = 49/1786 (3%) Strand=Plus/Plus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610 |||| | |||||||||| || ||| |||| | ||||| |||||||| |||||| Sbjct 692458 TCAACAGTGAACTGAATAGGCGCCGCAGCAGCCTGGGTACGGAGGTAGTACATGCCGGTC 692517 Query 105611 TTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTT 105670 ||||| || | ||||| || | ||||| | || |||| |||||| || Sbjct 692518 TTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTCC 692577 Query 105671 TCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATA 105730 | |||| | |||| | || |||||||||||| |||||| | || ||||| Sbjct 692578 TTCATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGGTCGGCTGCCATC 692637 Query 105731 TCAATGACATCCTTCATCTTG---ATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787 | | ||| | || | |||||||| || || ||| ||| |||||| ||| Sbjct 692638 TGCACAACAG---TGCGCTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCA 692694 Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACCCC---CCGCCTTGACCATGAGATCCTTC 105844 | ||||| | || || || || || || | || ||| || | | |||| Sbjct 692695 GCAGGGATGCTGGCAATGTTCTGGATCGAGCCGTTGTCGGCAATGA---TGCGGTTCTTC 692751 Query 105845 ATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATC 105904 || | ||||| || |||| | |||||| || | | |||||| | | Sbjct 692752 ATCGAGTCCGACCACAGGCCAAGGTCGACGAGATCGCGGAGCAACCACGGGTTGACCACC 692811 Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964 |||||||| || || | | | | |||||||| | ||||| || |||||||| Sbjct 692812 TGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATGTTGGAGGTGTACGGCTCAAAGCAC 692871 Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024 || || || || | || || | ||| ||| || ||||| || |||| || |||||| Sbjct 692872 TCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTG 692931 Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA-GCTT 106083 || |||| ||| | |||||| | ||||| || ||||||||| || | | | Sbjct 692932 TTGCGAACACCGTGAAGCTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGGTG 692991 Query 106084 GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAA 106143 || || || |||| |||| ||||| || || | || || || |||||| |||||| | Sbjct 692992 GGCTTGACATTCC-ACATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATA 693050 Query 106144 TGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATA 106203 || |||| || | | | || | || | ||| ||| | ||||| || Sbjct 693051 GGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACGGAGGCCGACAGAGCAGCGTGGTA 693110 Query 106204 CATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCG 106258 ||||| || ||||| | |||| |||| || || | || ||||| |||| Sbjct 693111 GATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCG 693170 Query 106259 TAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGT 106318 || | | ||| |||| || ||||| |||||||| | ||| || || | ||| Sbjct 693171 CAGAGCGAGGAAAG-----CATCAGCCAGACCCTGAACACCAACACCGATGGGGCGGTGG 693225 Query 106319 CGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGG 106375 ||||| || || | ||| || ||| ||||| || || ||||||| ||| Sbjct 693226 CGCATGTTG--CTGTTGCG-AGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATGCGG 693282 Query 106376 TTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGA 106435 || || || | ||| | | | |||| || || || || ||| | ||| | || Sbjct 693283 TTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCATACACGCCC 693342 Query 106436 GTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 106495 | | | | ||||| || || |||| || |||| ||||| |||||| |||| Sbjct 693343 TTGTTGTAGTCAACATAGGCGGGCAGAGCGAGGGAGGCCAGGTTGCACACAGCCACCTCA 693402 Query 106496 TCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAA 106555 || | | |||||| | || || || |||| |||||| || ||| || |||| Sbjct 693403 TCGGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGG 693462 Query 106556 TTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTC 106615 ||||| ||||| ||||| ||| || |||||||| |||||| |||| | || ||| Sbjct 693463 TTCTTCTGGTTGCTCTTGCGGTTACAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTC 693522 Query 106616 TCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG- 106673 || ||||| | || ||| || || | ||||| | || | | || | |||| ||| Sbjct 693523 TCGGTCTGAGCCTCGAGGATGGCATACCACAGCTTCTGAGCCTTG----ATGGTCTTGCG 693578 Query 106674 --CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTC 106731 | || ||||| ||||||||||| ||| ||||| || |||||||| || ||| Sbjct 693579 ACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTC 693638 Query 106732 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCG 106791 || ||||| || || || || || | |||| ||| | | || ||| || || Sbjct 693639 GGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACG 693698 Query 106792 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 106851 ||||||||| || || || |||||||| | || | |||||| || |||| || Sbjct 693699 CTTCATGAAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTC 693758 Query 106852 GTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 106911 | || ||||| || | || | |||||| | | ||| |||||||| ||||| || Sbjct 693759 CTTTCCATGGTTCTTGCGCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAG 693818 Query 106912 ATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGG 106967 ||||| || | | || | | | | ||| | || | ||||||||||| ||| Sbjct 693819 ATAGATGGCAAAGGCGCCGGGGCGCTTGTTG-CCACCCTGGTCAACATAGCGCGCGGTGT 693877 Query 106968 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATAC 107027 ||| || || |||||||| || || ||||||| || ||||| || || |||| Sbjct 693878 TGTTGAACACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATAT 693937 Query 107028 GAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGA 107087 ||| | | || | | | |||| | | ||||| || |||||| ||| |||| Sbjct 693938 AAGAACCAGTAGCACGGATACGGTGGACATTGAGACCAATGCCGCCAGCCATCTTGGAGA 693997 Query 107088 TTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGA 107147 | || || | | || || |||||||||| | || ||| ||||| | | | Sbjct 693998 TCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAA 694057 Query 107148 TAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTT 107206 |||||||| || | ||| || || || |||||||| ||||||||||| || | Sbjct 694058 CCAGGAAGCACGACGAGAGCTG-GGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAG 694116 Query 107207 GCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGT 107264 || || ||| | | |||| ||||||| || ||| ||||| | ||| || | || Sbjct 694117 GCATGGGTGA--AGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCTCGACGT 694174 Query 107265 CTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 || || |||||| | || |||||||| | ||||| ||||| Sbjct 694175 TGTCTCCCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGG 694220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979819156920