Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq101 114 8e-21
seq94 95.1 8e-15
>seq101
Length=737149
Score = 114 bits (126), Expect = 8e-21
Identities = 155/214 (72%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||
Sbjct 589970 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTCA 589911
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| ||||| || ||||| || | || | |||||||| ||
Sbjct 589910 AGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGG 589851
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCGGC--CTCAACATCGACGGTTATGGT 34948
|||||| |||||| ||||||| | ||| | ||| || |||| ||| |||||
Sbjct 589850 ATCTTCGACTTGACGT----TATCGATAGTATCCGACGACTCCACCTCGAGGGTGATGGT 589795
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || ||||| ||||| || ||||||||||||
Sbjct 589794 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 589761
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||||| || ||||| ||||| ||||| ||||| | || |||| ||
Sbjct 590426 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 590367
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || |||||||| | || | |||||||| || |
Sbjct 590366 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGA 590307
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| || ||| | || | || || || || || | || || || |||
Sbjct 590306 ATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTCTTT 590247
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||||||||| ||||||||||||
Sbjct 590246 CCCGTCAGAGTCTTCACGAAGATCTGCATA 590217
>seq94
Length=69539
Score = 95.1 bits (104), Expect = 8e-15
Identities = 138/193 (72%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| ||||| ||||| |||||| | || |||| || ||||| || || ||||| ||
Sbjct 45452 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATC 45511
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
|| || || ||||| | || | ||||||||||| |||||| ||||| || |
Sbjct 45512 AGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGAC--AT--T 45567
Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
||||| || || ||| || || | ||| || || || ||||| || ||||||||
Sbjct 45568 GTCGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCAC 45627
Query 34970 AAAGATCTGCATA 34982
|| |||||||||
Sbjct 45628 GAAAATCTGCATA 45640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633073789224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |