Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq60 439 5e-118 seq58 260 3e-64 >seq60 Length=1285956 Score = 439 bits (486), Expect = 5e-118 Identities = 1028/1520 (68%), Gaps = 57/1520 (4%) Strand=Plus/Plus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | ||||| | | |||||| | ||| || ||||| Sbjct 692800 GGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATGTTGGAGGTGTAC 692859 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||| | || ||||||||| || |||||||| | || ||||| ||||||||||||||| Sbjct 692860 GGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCC 692919 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG--AAGCTCTGCCCAGT 213084 | ||| |||||||| | || ||||| ||| | | || | ||| | |||||| Sbjct 692920 AGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTG-CTCCTTCAGGCTAT-CCCAGT 692977 Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144 |||| ||||| | ||| || ||||||||||||||||||| ||| || | Sbjct 692978 CCCAG---------AGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGGATACCCT 693028 Query 213145 TGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGG 213204 ||||| ||||| || | |||||||| || | ||||||||| | ||| || Sbjct 693029 GAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACGG 693088 Query 213205 ACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCT 213264 | ||| ||| ||||||| ||||||||| || || |||| | ||| |||| | |||| Sbjct 693089 AGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCT 693148 Query 213265 CTGGGGACGTGAAGGGCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCG 213323 | | |||| |||||||| || ||| |||| |||||||||| ||||| || || Sbjct 693149 CGGCGGACTCAAAGGGCATGCGCAGAGCGA-GGAAAGCATCAGCCAGACCCTGAACACCA 693207 Query 213324 ATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTT 213382 | |||||||| | ||| | || ||| ||| |||| ||| || |||||| ||| Sbjct 693208 ACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCGGGCACGGGGTAGTGGTT 693266 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 | || ||||| ||| ||||||||| |||| ||||||| | | ||| | ||| Sbjct 693267 GACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTC 693326 Query 213443 ---GTGATTGAACACGTAGCCCCCGTCCTGCACAAACT---CAGGCAGGGCGATGCTGGC 213496 || || ||||| ||| || | ||| | | ||||| |||| | ||| Sbjct 693327 AAAGTCAT---ACACG---CCCTTGTTGTAGTCAACATAGGCGGGCAGAGCGAGGGAGGC 693380 Query 213497 CAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||||||||| || |||||||| | | ||| | |||||| |||||||| |||||||||| Sbjct 693381 CAGGTTGCACACAGCCACCTCATCGGGAG-CGCAGTACTCAATGATCTCAGTGCACAGGT 693439 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTG 213614 || || || ||||| |||||||||| ||||| ||| ||| | ||| |||||| Sbjct 693440 TGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTT-GCGGTTACAGTGGTCCTTG 693498 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGT 213672 || |||||| ||||| |||||||| ||| | | | || || ||| ||| || | Sbjct 693499 TACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAT--GGCATACCACAGCT 693556 Query 213673 ACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCT 213732 | ||||||| | | ||| || | | ||||||||||| ||||| || Sbjct 693557 TCTGAGCCTTGATGGTCTTGC-GACCGCGACCCTC--AGCCTCGTACTTCTCGTACAGGG 693613 Query 213733 CGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGC 213792 | | ||| || | ||| || | | || || || || ||| ||||| || Sbjct 693614 CCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAG 693673 Query 213793 TCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTG 213851 |||| || ||| | |||| ||| | || |||||| || || |||| |||||| || | Sbjct 693674 TCCACTCGGCGTTCTTCTC-GACACGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGG 693732 Query 213852 AACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCA 213911 |||| || |||| | ||| ||| |||| ||| ||||||||||| | || || Sbjct 693733 AACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGATCCATGAACTCG 693792 Query 213912 AAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCG 213968 || | || |||||||||||||| | ||||||||||||||||| | || | ||||| Sbjct 693793 AACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCA 693852 Query 213969 CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTG 214028 |||||||| || | || ||||||| | || || | ||| | | || ||| Sbjct 693853 CCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATACCATTG 693912 Query 214029 GACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAGA 214086 ||| || |||||||| || ||||| || || | || | | | || ||| |||| Sbjct 693913 GACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGGTGGACATTGAGA 693972 Query 214087 GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGC 214146 || ||||| || || ||||||||||||||||||| | | | || || ||| | Sbjct 693973 --CCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATAC 694030 Query 214147 CGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GAC 214205 | | ||||||||||| | | | | || |||||| |||||||| ||||||| | Sbjct 694031 CCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCT-GGGCCTGCGGG 694089 Query 214206 GAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTG 214265 | |||| |||||| || |||||| ||||||| | | |||||| | || | | || Sbjct 694090 GTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTG 694149 Query 214266 TAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGC 214325 |||||||| | ||| || || || ||| | ||| | ||| | | Sbjct 694150 TAGGTCTCAATGACGCGCTCGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATC 694209 Query 214326 ATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAGCAGGTAGGAGCGCTCC 214382 ||||||||||| | ||| | || ||| | | |||||||||||| || |||||| Sbjct 694210 ATGTGCTGGGGGCGCTCGA-CAATC--TTGCCGTCAAGCTTGAGCAGGTAAGACCGCTCC 694266 Query 214383 AGAGTCTTGAACCCAAAGTA 214402 || |||||||| |||||||| Sbjct 694267 AGGGTCTTGAAGCCAAAGTA 694286 >seq58 Length=769140 Score = 260 bits (288), Expect = 3e-64 Identities = 574/852 (67%), Gaps = 30/852 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || ||| |||||||||||| Sbjct 628489 CTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTC 628430 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTC-AGGCCCATCTGTTCCAGCA 47957 ||||||| |||||||||| | || |||| || | || ||| | |||||| Sbjct 628429 CATGAAGTCAAAGGGGTTGGTGGCCTTGTACA-CCTTCTCGTTGCCGAGAGCGACCAGCA 628371 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | ||| |||||| ||||||||| | |||| Sbjct 628370 GGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGGG 628311 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||| ||||| |||| ||||||| ||| || |||||| || | | Sbjct 628310 CGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCGATGGCCACGGCATCGGTGA-----T 628256 Query 48078 GCTTAACGCGGGACTCTGA-GGGTTTGTTGCGCAGGTGCTT------GGCATAGAGCATG 48130 | || | | ||| ||| | ||| || | ||||||| || |||||| | Sbjct 628255 GATT--CTCTGGA---TGACGTCCTTGCTGGGGCGGTGCTTGAGGTGGGAGAAGAGCAGG 628201 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||| ||||| |||||| || ||||| || ||| ||| ||||||||||| || Sbjct 628200 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 628141 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || |||| |||||| || | || ||| | || ||||||| Sbjct 628140 CCGGGCATCATGCCGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 628081 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || || || || || | || ||| | || | | |||||| | Sbjct 628080 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGG 628021 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 |||||| | |||||||| |||||||| |||||| || || || || ||||| | Sbjct 628020 ATCCAGCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTTG 627961 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTAC 48427 ||||| | || || | ||| | ||||| | |||||||| | ||| Sbjct 627960 AAGAGGAACGAGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGC---GAGTAG 627904 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 |||| ||||| | ||||| || ||||||||| ||||||||| | ||||||| | Sbjct 627903 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGC 627844 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 |||||||| || | | ||| | ||| | ||| ||||| ||||| || || || || || Sbjct 627843 ACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGACGCG 627784 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATT 48603 || ||||||||||| | || | ||| ||||||| | | | || || || Sbjct 627783 GCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGTTCAG-GCGGTTGTT 627725 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| | || | || ||| |||||| | || || | |||||||| || || || Sbjct 627724 CCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCTCAGC 627665 Query 48664 TTTTTTGTACAT 48675 || |||||||| Sbjct 627664 CTTCTTGTACAT 627653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531251326720