Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq60 295 1e-74 seq58 221 2e-52 >seq60 Length=1285956 Score = 295 bits (326), Expect = 1e-74 Identities = 851/1283 (66%), Gaps = 55/1283 (4%) Strand=Plus/Plus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474 || ||| |||||||||||||||||||| |||||| || ||| || ||| | ||||||| Sbjct 693093 CGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAG-CTCCCGAGCCTCGG 693151 Query 221475 GAGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 || |||||||| ||||| | | ||||| | || ||||| ||||| || || | Sbjct 693152 CGGACTCAAAGGGCATGCGCAG-AGCGAGGAAAG-CATCAGCCAGACCCTGAACACCAAC 693209 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTG 221590 ||||||||| | ||| | | ||||| | ||| || || |||||||| || |||| Sbjct 693210 ACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGA--GCCTCGGGCACGGGGTAGTGGTTG 693267 Query 221591 ACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG 221650 || || || | || ||||||| || ||| ||||||| ||| | || || Sbjct 693268 ACATCAATGA------TGCGGTTCAGGTTGCGGAC---AACCACCATGGTGACCTCGTGC 693318 Query 221651 TGATTG---AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCA 221707 | || || | || |||| || || | || ||| | ||| || || Sbjct 693319 AGCTTCTCAAAGTCATACACGCCCTTGTTGTAG------TCAACATAGGCGGGCAGAGCG 693372 Query 221708 ACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTA 221767 | | ||||||||| ||||| |||||||| || | |||| |||||||| || Sbjct 693373 AGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTG 693432 Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827 || |||||| || ||||| ||||||| || || || |||||| || ||| | Sbjct 693433 CACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTA-CAGTG 693491 Query 221828 -TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886 |||||||| ||||| ||||| ||| ||||| ||||||| | || || | ||| Sbjct 693492 GTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCA 693551 Query 221887 GAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTA 221944 || | |||| || | | ||| | ||| || |||||| | || | | | || || Sbjct 693552 CAGCT-TCTGAGCCTTGATGGTCTTGC-GACCGCGACCCTCAGCCTCGTACTTCTCG-TA 693608 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 || || | | |||| || ||||| ||| | || || || ||| | ||| ||| Sbjct 693609 CAGGGCCT--CGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCAC 693666 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 |||||| |||| | ||| | | ||| | || ||||||||| || ||||||||||| Sbjct 693667 ATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGA 693726 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 ||| | || | |||||||| || ||||||| || | ||| || | |||||||| Sbjct 693727 GCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGATCCATG 693786 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 ||||| || | || |||||||||||||| ||||||| ||| | |||||||| |||||| Sbjct 693787 AACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTTG 693846 Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 ||||||||||| || || | | | |||||| | ||||| | || | | Sbjct 693847 TTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATA 693906 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 || ||||| || ||||| || ||| || | ||| || | || ||| || Sbjct 693907 CCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCAC---GGATAC-GGTG 693962 Query 222305 GACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 ||||| || || || || || || ||||||||||||||| ||||||| ||||| Sbjct 693963 GACATTGAGACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC 694022 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| ||||| || ||| ||||| | | | ||| || || ||||| | ||| | Sbjct 694023 ATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCTGGGC 694082 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 | | || || ||||| || || ||||| ||| || || ||| | || ||||| Sbjct 694083 CTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACAT 694142 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCA 222537 || | ||| ||||| | ||| | ||| |||||| ||| || ||| | || Sbjct 694143 CAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCCCAGA---TGCCAACAGCAAC 694199 Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTAC 222595 | |||| ||||| |||||| | ||| ||| || | |||| ||||||||| Sbjct 694200 ACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCT--TGAGCAGGTAA 694257 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655 || ||||| |||||||| |||||||| | | || ||||| | | ||| || | | Sbjct 694258 GACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCGTAGACAATG 694317 Query 222656 GCGGCGTCCAGCTCCGACTTGTG 222678 || | |||||||||| ||| || Sbjct 694318 GCCGAGTCCAGCTCCTCCTTATG 694340 Score = 118 bits (130), Expect = 2e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| ||||| ||||| ||||| | ||||| | | |||||| | ||| || ||| |||| Sbjct 692802 GTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATGTTGGAGGTGTACGG 692861 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || |||||||||||| || ||||| | || ||||| ||||||||||| |||| Sbjct 692862 CTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAG 692921 Query 221236 CAGCAGACTGTTGCG 221250 ||||||||||||||| Sbjct 692922 CAGCAGACTGTTGCG 692936 >seq58 Length=769140 Score = 221 bits (244), Expect = 2e-52 Identities = 572/862 (66%), Gaps = 34/862 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | ||| |||||| ||||| ||||| || ||| Sbjct 627644 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 627703 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTC-TCA 25591 ||||||| || | | |||| || || || | | ||||||| | | ||| || Sbjct 627704 TCCAAGGATATCCATGACTGGAACAACCGC-CTGAACGATGACGAGC-GTTTCTTCATCT 627761 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | || | | || ||||| || || ||||| || || || |||||||| ||| |||| Sbjct 627762 CGCACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGC 627821 Query 25652 GATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| | || |||||| | | || ||||| || |||||||| |||||||| Sbjct 627822 GTTTCAGCGCCGAGGTGCAGGTGCCTG-AGGCCCGCTGCTTCTACGGCTTCCAGATCATG 627880 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA- 25766 || || || | ||||| ||| || | ||| || || || ||||| | || Sbjct 627881 ATGGAGAACATCCACTCCGAGACCTACTC---GCTGCTCATTGACACCTACATCAAGGAG 627937 Query 25767 -CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | |||| | | | || || || ||||| || ||| ||| ||||| | || Sbjct 627938 CCCTCGCAGCGCTCGTTC--CTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGA 627995 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAG-AG-CG--CTACGTTTGGCGAGCGG 25881 |||| |||||||| |||||| | | || || || ||||| || |||| Sbjct 627996 AGGCCGACTGGGCCATCCGCTGGATCCAGGACAAGGAGTCGTCCTACG----GCCAGCGC 628051 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 ||||| |||||||| || || ||||||||||| ||||||||| | || || | |||||| Sbjct 628052 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 628111 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||| ||||| || || | |||||||| ||| ||| ||||||||||| ||| | Sbjct 628112 TGGGTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGT 628171 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 ||||||||||| |||| || || ||||||||||||| | | |||| | ||| Sbjct 628172 GACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTC---CCACCTCAAGCAC-CG 628227 Query 26062 CCTTCTCAAGAGAC--CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGT 26119 || |||| ||| | || | || ||||||| || || |||| |||||| |||||| Sbjct 628228 CCCCAGCAAG-GACGTCATCCAGAGAATCATCACCGATGCCGTGGCCATCGAGCAGGAGT 628286 Query 26120 TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAAT 26179 | ||||||||||| || || |||| || | Sbjct 628287 TCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAGCAGT 628346 Query 26180 ACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTA 26239 |||| |||| || ||||||| |||||| | || || || | | |||| Sbjct 628347 ACATCGAGTTCGTCGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGG 628406 Query 26240 CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 | | ||||| || ||||| ||||| ||||| ||| ||| || |||||||||||||| | Sbjct 628407 CCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTCG 628466 Query 26300 AAAAGAGGGTCGGCGACTATCA 26321 | ||| | || |||||||| || Sbjct 628467 AGAAGCGTGTTGGCGACTACCA 628488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843255795520