Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq79 104 2e-16 seq94 91.5 1e-12 >seq79 Length=2610973 Score = 104 bits (114), Expect = 2e-16 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | ||| ||||| ||||| ||||||||||||||||| ||| Sbjct 579487 TTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGACGCTGT 579428 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || ||||| || |||||||| || ||||| ||||| || || || || Sbjct 579427 TGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCC 579368 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | | | | |||||||| ||||| || |||||||||||||| ||||| Sbjct 579367 GAAGACTCCA-CCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318 >seq94 Length=69539 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||| ||||| ||||||||||| || || ||||| || || || || || ||||| Sbjct 45484 ATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTT 45543 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| |||||| || |||||||| | | |||||||| || Sbjct 45544 GTCCTGGATCTTCGACTTGACATTGTCGATAGTATCCGAGGACTCCACCTCAAGGGTGAT 45603 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||| |||||||| || Sbjct 45604 AGTCTTGCCCGTAAGGGTCTTCACGAAAATCTG 45636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268173494984684