Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq60 223 4e-53 >seq60 Length=1285956 Score = 223 bits (246), Expect = 4e-53 Identities = 942/1468 (64%), Gaps = 45/1468 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| | || || |||| ||| || |||| | Sbjct 694286 TACTTTGGCTTCAAGACCCTGGAGCGGTCTTACCTGCTCAA--GCTTGACGGCAAGATTG 694229 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || ||| ||| ||||| ||||||| || || | |||||| || || || | | Sbjct 694228 TCGAGCGCCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATCTGGGGAGACAACGTCG 694169 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACC 75321 | ||| | ||||| ||| || ||||||| |||| | | ||| || || | || Sbjct 694168 AGCGCGTCATTGAGACCTACAACTTGATGTCCAGCAAGTTCT--TCACCCATGCCTCCCC 694111 Query 75322 AACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCA 75380 ||||||||||| |||||||| || || || ||| | || |||||||| | | | Sbjct 694110 CACCCTCTTCAACGCTGGTACCCCGCAGGCC-CAGCTCTCGTCGTGCTTCCTGGTTGATA 694052 Query 75381 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAA 75440 ||||| ||| || | |||||||||| || || | | || || ||||| | Sbjct 694051 TAAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATCTCCA 693992 Query 75441 AGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTC 75500 || |||||| || ||||| | | |||| | | | || | | ||| |||| Sbjct 693991 AGATGGCTGGCGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACTGGTTCTTATATTG 693932 Query 75501 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560 || || ||||| || ||||||| || || |||||||| || || ||| ||| | Sbjct 693931 CCGGAACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGAGTGTTCAACAACACCG 693872 Query 75561 CGCGCTATGTAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAA 75616 |||||||||| | || | | ||| | || || || | || |||| | || Sbjct 693871 CGCGCTATGTTGACCAGG-GTGGCAACAAGCGCCCCGGCGCCTTTGCCATCTATCTCGAG 693813 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| |||||| | | |||||| | || | || ||||| || | || ||| Sbjct 693812 CCGTGGCACGCCGATGTGTTCGAGTTCATGGATCTGCGCAAGAACCATGGAAAGGAGGAG 693753 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | || |||||| | || | |||||||| || || || ||||||||||| || Sbjct 693752 GTCCGCGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGCGTGTC 693693 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 ||| || | | ||| |||| | || || || || || ||||| ||||| Sbjct 693692 GAGAAGAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGC 693633 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAG---CCAAT 75853 || |||||||| || ||||| ||| ||||| || | |||||| | | ||| Sbjct 693632 TACGGCGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGCAA- 693574 Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 ||| | | || | | || | | ||| | || || ||| | | ||||| ||||| || Sbjct 693573 --GACCAT-CAAGGCTCAGAAGCTGTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGG 693517 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 | || | ||||| |||||||| |||||| ||||| ||||| ||||| |||| Sbjct 693516 CAACCCCTTCATGCTGTACAAGGACCACTGTAACCGCAAGAGCAACCAGAAGAACCTGGG 693457 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 || || ||||| || || ||||| || || | |||||| | | |||||| Sbjct 693456 TACCATTCGCAGCTCCAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGT 693397 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCAC 76092 |||||| ||||| |||| || |||| || || ||||| | | | | || Sbjct 693396 GGCTGTGTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTATGTTGACTACAACAAGGGCGT 693337 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | ||| | ||| || || || || |||| | | | ||| | || || ||||| | Sbjct 693336 GTATGACTTTGAGAAGCTGCACGAGGTCACCATGGTGGTTGTCCGCAACCTGAACCGCAT 693277 Query 76153 CATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209 |||||| || || ||||| ||| || ||| | || || ||||| ||| | Sbjct 693276 CATTGATGTCAACCACTACCCCGTGCCCGAGGCT-CGCAACAG--CAACATGCGCCACCG 693220 Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-- 76267 || || ||| | |||||||| ||||| || |||| ||| | | || |||| Sbjct 693219 CCCCATCGGTGTTGGTGTTCAGGGTCTGGCTGATG-----CTTTCCTCGCTCTGCGCATG 693165 Query 76268 ---TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCAC 76324 ||||| || | || || |||| |||| | ||||| || ||||| || ||| Sbjct 693164 CCCTTTGAGTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGACCATCTACCAC 693105 Query 76325 GCATCCCTGGAGGC--GAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 || | ||| ||| || | || | || | | | || |||| || | || Sbjct 693104 GCTGCTCTGTCGGCCTCCGTGGAGA--TCGCCAAGGAGGAGGGAACCTACTCCACCTATG 693047 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC 76442 |||| ||||||| || || || | || |||||||| |||| |||| || || || | | Sbjct 693046 AGGGCTCTCCCGTCTCTCAGGGTATCCTGCAGTTTGACATGT-GGAATGTCAAGCCCACC 692988 Query 76443 -TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 | || ||||||||| || ||||| | |||||| | ||| |||| |||||| Sbjct 692987 GACCTCTGGGACTGGGATAGCCTGAAGGAGCAGATCAAGCTTCACGGTGTTCGCAACAGT 692928 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 || || |||| || ||||| || ||| ||| | || || | || || || || ||| Sbjct 692927 CTGCTGCTGGCTCCCATGCCCACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGC 692868 Query 76562 TTTGAACCATACACAACAAACATCTACC 76589 ||||| || ||||| | |||||||||| Sbjct 692867 TTTGAGCCGTACACCTCCAACATCTACC 692840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568608203040