Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq112 116 1e-20 seq60 107 6e-18 seq58 100 8e-16 seq65 91.5 4e-13 seq45 86.0 2e-11 >seq112 Length=899235 Score = 116 bits (128), Expect = 1e-20 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 ||||||||| || ||||| ||| | || || || || || || || ||||| |||| Sbjct 55172 ACGACGCTGGATGTAACCGGTTTCGGCAGTCTTGACTGCAGTGTCGATCAGACCCTCACG 55113 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711 |||| |||| || |||||||| | ||| ||| | || | || | ||||| |||| Sbjct 55112 ACCAGCCATGGCGTGGAAGAAGAACTCGGACGGGGTCAATCCACGAAGATAGGAGTTCTC 55053 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 || || ||||| || |||||||| | ||| |||||| ||||| || || || | || Sbjct 55052 GACAAATCCACGGGCTTCGGGCGAGTAATCGTCCTTGGTGAAGTGGGGAAGAGTGCGGTA 54993 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 || |||| | || ||||||||||| || || ||||||| |||| Sbjct 54992 CTTGAAGCCAAAGGGAATACGCTTTCCCTCGACAATCTGCTGGCCCA 54946 >seq60 Length=1285956 Score = 107 bits (118), Expect = 6e-18 Identities = 349/540 (65%), Gaps = 9/540 (2%) Strand=Plus/Plus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | |||||| ||||||||| || || ||||| || | ||||||| Sbjct 693410 CGCAGTACTCAATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCT 693469 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || | |||||| |||||||| || ||| | ||| | || ||||| ||| Sbjct 693470 GGTTGCTCTTGCGGTTACAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCT 693529 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || || || ||| || | | || || || |||| | || | Sbjct 693530 GAGCCTCGAGGATGGCATACCACAGCTTCTGAGCCTTGATGGTCTTGCGACCGCGACCCT 693589 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 | | ||| || ||| ||||| | | | ||||| ||||| || || || || | Sbjct 693590 CAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGG 693649 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAA 155922 |||||| | |||||| | ||| | ||| || || ||| |||||| ||| | Sbjct 693650 GGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGA---CACGCTTCATGA 693706 Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982 | | |||| ||| | ||| ||| | || || || |||||| | || | Sbjct 693707 AGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCAT 693766 Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042 | ||||| || || || | ||| || | ||| | || ||||| ||||| || | Sbjct 693767 GGTTCTTGCGCAGATCCATGAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATGG 693826 Query 156043 CAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099 |||| || | |||| |||||||| || ||||| || || || || ||||| | Sbjct 693827 CAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACA 693886 Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159 | | ||||| || || ||||||||||| ||||||||||||||| ||||| ||||||| Sbjct 693887 CTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAG 693946 >seq58 Length=769140 Score = 100 bits (110), Expect = 8e-16 Identities = 238/357 (67%), Gaps = 12/357 (3%) Strand=Plus/Plus Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366 || ||||| ||| || || | ||||| |||||| || ||||| || || || Sbjct 627848 GAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTAC 627907 Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGC 133425 || || ||||| || |||||||| || || ||| || | | | |||||||| Sbjct 627908 TCGCTGCTCATTGACACCTACATCAAGGAGCCCTCGCAGC-GCTCGTTCCTCTTCAACGC 627966 Query 133426 CATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGA 133485 |||| | | || || || ||||| | |||||||| || ||||||||||| Sbjct 627967 CATTGACACCATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGCTGGATCCAGGA 628026 Query 133486 CAAGCGTGCGAGTTTTGCTAC-----TCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtt 133540 |||| |||| | |||| || || ||||| ||||| | || |||||||| Sbjct 628027 CAAG-----GAGTCGTCCTACGGCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATC 628081 Query 133541 tttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGA 133600 || ||||| ||||| |||| || || || ||| | || ||||| || || | || || Sbjct 628082 TTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGGGTCAAGAAGCGCGGCATGATGCCCGGC 628141 Query 133601 CTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 ||| || || ||||| || || || | ||||||| || |||||||| || ||| Sbjct 628142 CTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCC 628198 >seq65 Length=54341 Score = 91.5 bits (100), Expect = 4e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 251430 ATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGA-GATGCAC 251488 |||||| | | |||| || || | ||| | || || |||| ||| ||| | |||| Sbjct 6703 ATGGACACGGAAAGCGTCGGACACTTCAAACAGACGCTCCTTCAGGAA-CGACGCCGCAC 6761 Query 251489 CGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCC 251548 |||| | |||||| ||||||||||||||||| ||||| || |||||||| || || || | Sbjct 6762 CGTGAGCAATCATGCAATCACGCTCCATTTCTCCGAATCGGAGACCACCGTCACGCGCAC 6821 Query 251549 TACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCT 251608 |||||| | ||||| || || | | || ||||| || ||| || || Sbjct 6822 GACCCTCCACCGGCTGGCGCGTCATGATCTGCACCGGACCACGGGCACGGGCGTGGATCT 6881 Query 251609 TATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 | || | ||||| || ||||||||||||| | | || |||| ||| Sbjct 6882 TGTCGTCCACCATGTGGCGGAGACGCTGGTAGTAGGTCGGGCCGAAGAA 6930 >seq45 Length=537551 Score = 86.0 bits (94), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 ||| ||| | || |||||||||||||||||||| || || || ||||| || | || | Sbjct 274995 GGCCAGACCGCCCAGCGAGTCACGGTCGAGGAAGTTCGTTGGCTCGTCCAGCACGAGCAA 274936 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 |||||| | ||||||| || | || | |||||||| |||||||| ||||| || || Sbjct 274935 GTGCGGGTTGTTCCACATGGCACCGGCAATGACTACCTTGACCTTCTGGCCGCCCGACAG 274876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815091930821