Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq52 201 1e-45
seq60 152 6e-31
seq58 145 9e-29
seq46 131 2e-24
seq68 118 1e-20
seq54 93.3 5e-13
seq56 89.7 6e-12
>seq52
Length=911667
Score = 201 bits (222), Expect = 1e-45
Identities = 284/398 (71%), Gaps = 6/398 (2%)
Strand=Plus/Plus
Query 18091 ACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCG 18150
|||| ||| |||||||| ||||| | |||||||||||| |||||| || ||||||
Sbjct 334559 ACCAGCTTCGGCGAGTCCCACGGCAAAGCCGTCGGCTGCATTATCGACTGCCCGCCGCCA 334618
Query 18151 TGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAG 18210
|| || | ||| |||| |||||||||||||| || || | || ||||| || |||||
Sbjct 334619 GGCCTGGCGCTGACCGAAGCCGACATCCAGCCGCAACTGAACCGCCGCCGGCCCGGCCAA 334678
Query 18211 GGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAG 18270
|| | | ||||||||||| ||||| || ||||| | ||||| || ||||| |||
Sbjct 334679 AGCTCGATCACCACGCCGCGCGACGAGAAGGACCGCGTGACCATCCTCTCCGGCACCGAG 334738
Query 18271 AACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCC 18330
|||| ||||||| ||| |||| || |||| | || |||||| |||||||| ||
Sbjct 334739 GCCGGCTTCACGCTGGGCACGCCGCTCAGCCTGGTGGTCGCCAACGAAGACCAGCGCCCG 334798
Query 18331 GTCGACTA---TTCCGACATGTGCAAGGTG---CCGCGGCCCTCACACGCCGACTACACC 18384
|||||| || || | | || ||||||||| |||||||||| ||||
Sbjct 334799 CACGACTACGGCGGCGCCACCGTCGACCTGTACCCGCGGCCCAGCCACGCCGACTTCACC 334858
Query 18385 TACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAG 18444
||| | |||||||||||||||||| ||||| ||||| || ||||||
Sbjct 334859 TACCAGCACAAGTACGGCATCAAGGCCAGCAGCGGCGGCGGCCGCAGCAGCGCGCGCGAG 334918
Query 18445 ACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
||| | |||||| || ||||| || || ||||||||
Sbjct 334919 ACCATTGCGCGCGTGGCGGCCGGTGCCGTGGCCGAGAA 334956
Score = 131 bits (144), Expect = 2e-24
Identities = 118/146 (81%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 19048 ACAGCATCGGCGGCACGGTGACGTGCGT-GTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||| ||||||||| || || ||||| ||| |||||||||||||| ||||||||||||
Sbjct 335193 ACAGCACCGGCGGCACCGTCACCTGCGTCGTG-CGCAACGTGCCGGCCGGCCTCGGCGAG 335251
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| |||||||||||| |||||| || ||||| ||||||||| ||||| ||| |
Sbjct 335252 CCTGCCTTTGACAAGATGGAGGCCAAACTGGCCCATGCCATGCTGAGCATCCCCGCCGTC 335311
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192
|||| |||||||| ||| ||| ||
Sbjct 335312 AAGGCGTTCGAGATCGGCTCCGGCTT 335337
>seq60
Length=1285956
Score = 152 bits (168), Expect = 6e-31
Identities = 301/447 (67%), Gaps = 15/447 (3%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || |||||||| |||| ||| || || || |||||||| | || || |||||
Sbjct 693855 CTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATACCATTGGA 693914
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
| ||| ||||| || || | || | || | || || | ||| | | ||
Sbjct 693915 CGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGGTGGACATTGAGACC 693974
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|||||||| ||| ||||||||| | ||||| ||||| ||||| ||||| |||||
Sbjct 693975 AATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTC 694034
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| |||| || || || || |||||||||||| || | |||| || ||
Sbjct 694035 AATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCTGGGCCTGCGGGGTACC 694094
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| ||||| | || |||||| |||| | ||||| || ||||||
Sbjct 694095 AGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGT 694154
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| | |||||| || |||| | | || || ||| | || ||
Sbjct 694155 CTCAATGACGCGC------------TCGACGTTGTC---TCCCCAGATGCCAACAGCAAC 694199
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| |||||||| | |||| | |||| |||||| ||
Sbjct 694200 ACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAGGTAAGA 694259
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA 1630511
||| || |||| ||| |||||||||
Sbjct 694260 CCGCTCCAGGGTCTTGAAGCCAAAGTA 694286
Score = 105 bits (116), Expect = 8e-17
Identities = 156/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846
||||||||| ||||| ||||| | |||| || ||| || ||||| ||| | |
Sbjct 693104 CGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGG 693163
Query 1627847 GCAGGTCCAT--CATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCG 1627904
||| | || | || || || || || || ||||| || || || || || || ||
Sbjct 693164 GCATGCGCAGAGCGAGGAAAGCA--TCAGCCAGACCCTGAACACCAACACCGATGGGGCG 693221
Query 1627905 GTGGCGCAGGTTCGAGTGGCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCG 1627964
|||||||| ||| || ||| ||||||||||| ||||||||||||| || || | |||
Sbjct 693222 GTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATGCG 693281
Query 1627965 GTTGAGGTTGCCCACCACGACCTGGACGATCTCGTGCAG 1628003
||| ||||||| || || ||| | || |||||||||
Sbjct 693282 GTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAG 693320
>seq58
Length=769140
Score = 145 bits (160), Expect = 9e-29
Identities = 230/323 (71%), Gaps = 9/323 (3%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| || ||| |||||| |||||||||||||| | ||||||||
Sbjct 628494 GCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAGATG 628435
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || ||||||| | |||||| ||| ||| ||||| | |
Sbjct 628434 TTCTCCATGAAGTCAAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGAGCGACC 628375
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||||||||||||||| |||||||||||||| ||| ||| |||||||||||| |
Sbjct 628374 AGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGC 628315
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || ||||| | |||| | | ||||| | |||||| | ||||| ||| ||||
Sbjct 628314 AGGGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCGATGGCCACGGCATCGGTGATG 628255
Query 868931 ATCTGCCTGG-GCACGTC--GGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986
|| | |||| ||||| || | || | | |||| | | | | ||||||||||
Sbjct 628254 AT-TCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTG---GGAGAAGAGCAGGCA 628199
Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008
||| |||||| ||||| |||||
Sbjct 628198 GGCGAAGTCGGTGTGCAGACCCT 628176
Score = 122 bits (134), Expect = 1e-21
Identities = 179/251 (71%), Gaps = 3/251 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||||||||||||||| ||| | |||| | ||| ||
Sbjct 627897 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGCACCTGC 627838
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| |||| || || ||||||||||| || |||||||| ||||||||
Sbjct 627837 ACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGACGCGGCGAAG 627778
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAGTGG 869809
|| || || | |||| ||| ||| |||||||| ||| | | ||| |||||
Sbjct 627777 AAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGTTCAGGCGGTTGTTCCAGTCA 627718
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| | || | ||||| | ||||||||| ||||||| ||||||||| ||||| |||
Sbjct 627717 TGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCTCAGCCTTCTTG 627658
Query 869870 TACATCTCCCA 869880
||||||| |||
Sbjct 627657 TACATCTGCCA 627647
Score = 122 bits (134), Expect = 1e-21
Identities = 203/289 (70%), Gaps = 11/289 (4%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| || ||||| |||||| |||| ||||||||||| | |||||||||
Sbjct 628180 ACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCCGCGCTT 628121
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||| ||| ||||| | |||| || ||| |||||||||||||||||||||||
Sbjct 628120 CTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAA 628061
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGC 869355
| | | || |||| | | || | ||| ||||||| | |||||| || ||
Sbjct 628060 GGCAACCAGGCGCTGGCCGTAG--GACGA----CTCCTTGTCCTGGATCCAGCGGATGGC 628007
Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG-TGGTCCT 869414
|||||||||||| || | | | || | ||||| |||||| |||||| | |
Sbjct 628006 CCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGGAACGAGCG 627947
Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| | | || ||||||| |||||||| || || ||||| ||||||||
Sbjct 627946 CTGC-GAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCGAGTAGGTCTC 627899
>seq46
Length=1302616
Score = 131 bits (144), Expect = 2e-24
Identities = 98/115 (85%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| ||||| |||||||| || || ||| |||| |||||| |||| ||||||
Sbjct 1109851 GCCTCCAACTATCTCGATATCAAGCCACTCCTTGATGTTGGCTGCAAGACTGTTGCCAAC 1109910
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||| || |||||||| || |||||||| ||||||| | |||
Sbjct 1109911 ATGATCAAGGGCAAGTCACCTGAGGAGATTCGTAAGACCTTCAACATCACGAACG 1109965
Score = 102 bits (112), Expect = 1e-15
Identities = 156/217 (72%), Gaps = 9/217 (4%)
Strand=Plus/Minus
Query 733053 GTCAAGATCGTGACGCGCGCCATGCGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGC 733112
|||||| | |||||| | ||| | ||| ||| |||||||||| | |||||||||
Sbjct 180386 GTCAAGGTGCAGACGCGGCAGACGCGGCGGCCGGAGCTGGGCGACAAGTTCTCGTCGCGC 180327
Query 733113 CACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC--GAGGACATGCCCTGGTCGC 733170
||||| || |||||| || |||| | | || ||| |||||| |||| | || |
Sbjct 180326 CACGGGCAGAAGGGCGTGGTCGGCATCATTG--TCGACCAGGAGGACCTGCCGT--TCTC 180271
Query 733171 CG-CGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATG 733229
|| | ||| || |||||||||| | || |||||||||| | ||||||||||||||
Sbjct 180270 CGACTCGG--GCATTGTGCCCGACATCATCATGAACCCGCACGGCTTCCCGTCGCGCATG 180213
Query 733230 ACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGG 733266
|| | |||||| || ||||| ||| |||||||
Sbjct 180212 ACGGTCGGCAAGCTGATCGAGTGCCTGACCGGCAAGG 180176
>seq68
Length=963626
Score = 118 bits (130), Expect = 1e-20
Identities = 166/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||||||||| || || ||| ||| | ||| |||| || ||| || || |
Sbjct 703128 TCGACGTCGTTCGGAATCGCATAAAGGGCTTCGCGCAAAAGAAAGTCACCCTACCACCGG 703187
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| ||||||||| ||||||| |||||||| |||||| || | || || | ||||||||||
Sbjct 703188 GCCGCCACAAGCTGATCATTCTCGACGAAGCCGACAGCATGACCTCTGGCGCCCAGCAGG 703247
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
| |||| ||| ||||||| || | ||||| |||||||| || | || ||||||
Sbjct 703248 CTTTGCGACGCACAATGGAAATCTACTCGAACACCACGCGCTTCGCGTTTGCTTGCAACC 703307
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCG 1574236
||| | | |||||||| | |||| |||||| |||||||| |||||
Sbjct 703308 AGTCCAACAAGATCATCGAGCCGCTCC--AGTCGCGGTGCGCCATCCTGCG 703356
>seq54
Length=747515
Score = 93.3 bits (102), Expect = 5e-13
Identities = 102/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1852174 CTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGC 1852233
||| |||||||| ||||||||||| ||||||||||||||| ||||||||| || |
Sbjct 411586 CTTCCGCTGGTCAACACCGCCAAACTGCACGTCGACGTCGAGGTACTGCTCGTCCAGCAC 411645
Query 1852234 CTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCTTGACCACCT 1852292
||||| | || |||||||| | ||| || | | |||| |||| | |||||| ||||
Sbjct 411646 CTGCAGCACCGAGTAGAGCAGGCCGCTGAGCGGGGCGTTGTCGGT-CTGCTTGACGACCT 411704
Query 1852293 GAGCGGCGGCCTT 1852305
||| |||||||
Sbjct 411705 CGGCGCCGGCCTT 411717
>seq56
Length=737661
Score = 89.7 bits (98), Expect = 6e-12
Identities = 79/96 (82%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGAT-GGCCAGCGGCAGTGCCGACGCCATCTCGCGGTG 1726791
||||||||||||||||||||||| | || ||| | || ||||||||| |||||||||
Sbjct 317126 CCGTCGGTGCCGTTCTTGAAGCCCACCGGGAAGCTG-AGCCCCGACGCCAGCTCGCGGTG 317184
Query 1726792 CACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCC 1726827
|| ||| |||||||| ||||| || ||||| || ||
Sbjct 317185 CAGCTGACTCTCGGTGGTGCGAGCTCCCACAGCTCC 317220
Score = 86.0 bits (94), Expect = 8e-11
Identities = 93/121 (77%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 344182 GTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACG-TCTGACGAGGC 344240
||||| ||||| |||||||| || ||||| || ||||||||||| ||| || | |||
Sbjct 335761 GTGGCGTTCCCGACCGAGACGGTGTACGGGCTGGGCGCCGACGCAACGCGCTCGC-CGGC 335819
Query 344241 CGTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGT 344300
||||| |||||| | | ||||||||| || || |||||||| | || ||||||||
Sbjct 335820 GGTGCGCGGCATCTACGCCGCCAAGGGCCGGCCGTCAGACAACCCGCTGATCGTGCACGT 335879
Query 344301 G 344301
|
Sbjct 335880 G 335880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107128285397161
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