Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq52 201 1e-45 seq60 152 6e-31 seq58 145 9e-29 seq46 131 2e-24 seq68 118 1e-20 seq54 93.3 5e-13 seq56 89.7 6e-12 >seq52 Length=911667 Score = 201 bits (222), Expect = 1e-45 Identities = 284/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 18091 ACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCG 18150 |||| ||| |||||||| ||||| | |||||||||||| |||||| || |||||| Sbjct 334559 ACCAGCTTCGGCGAGTCCCACGGCAAAGCCGTCGGCTGCATTATCGACTGCCCGCCGCCA 334618 Query 18151 TGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAG 18210 || || | ||| |||| |||||||||||||| || || | || ||||| || ||||| Sbjct 334619 GGCCTGGCGCTGACCGAAGCCGACATCCAGCCGCAACTGAACCGCCGCCGGCCCGGCCAA 334678 Query 18211 GGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAG 18270 || | | ||||||||||| ||||| || ||||| | ||||| || ||||| ||| Sbjct 334679 AGCTCGATCACCACGCCGCGCGACGAGAAGGACCGCGTGACCATCCTCTCCGGCACCGAG 334738 Query 18271 AACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCC 18330 |||| ||||||| ||| |||| || |||| | || |||||| |||||||| || Sbjct 334739 GCCGGCTTCACGCTGGGCACGCCGCTCAGCCTGGTGGTCGCCAACGAAGACCAGCGCCCG 334798 Query 18331 GTCGACTA---TTCCGACATGTGCAAGGTG---CCGCGGCCCTCACACGCCGACTACACC 18384 |||||| || || | | || ||||||||| |||||||||| |||| Sbjct 334799 CACGACTACGGCGGCGCCACCGTCGACCTGTACCCGCGGCCCAGCCACGCCGACTTCACC 334858 Query 18385 TACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAG 18444 ||| | |||||||||||||||||| ||||| ||||| || |||||| Sbjct 334859 TACCAGCACAAGTACGGCATCAAGGCCAGCAGCGGCGGCGGCCGCAGCAGCGCGCGCGAG 334918 Query 18445 ACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 ||| | |||||| || ||||| || || |||||||| Sbjct 334919 ACCATTGCGCGCGTGGCGGCCGGTGCCGTGGCCGAGAA 334956 Score = 131 bits (144), Expect = 2e-24 Identities = 118/146 (81%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 19048 ACAGCATCGGCGGCACGGTGACGTGCGT-GTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||| ||||||||| || || ||||| ||| |||||||||||||| |||||||||||| Sbjct 335193 ACAGCACCGGCGGCACCGTCACCTGCGTCGTG-CGCAACGTGCCGGCCGGCCTCGGCGAG 335251 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || |||||||||||| |||||| || ||||| ||||||||| ||||| ||| | Sbjct 335252 CCTGCCTTTGACAAGATGGAGGCCAAACTGGCCCATGCCATGCTGAGCATCCCCGCCGTC 335311 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 |||| |||||||| ||| ||| || Sbjct 335312 AAGGCGTTCGAGATCGGCTCCGGCTT 335337 >seq60 Length=1285956 Score = 152 bits (168), Expect = 6e-31 Identities = 301/447 (67%), Gaps = 15/447 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || |||||||| |||| ||| || || || |||||||| | || || ||||| Sbjct 693855 CTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATACCATTGGA 693914 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||| ||||| || || | || | || | || || | ||| | | || Sbjct 693915 CGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGGTGGACATTGAGACC 693974 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||||| ||| ||||||||| | ||||| ||||| ||||| ||||| ||||| Sbjct 693975 AATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTC 694034 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||| || || || || |||||||||||| || | |||| || || Sbjct 694035 AATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCTGGGCCTGCGGGGTACC 694094 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || |||||| |||| | ||||| || |||||| Sbjct 694095 AGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGT 694154 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | | |||||| || |||| | | || || ||| | || || Sbjct 694155 CTCAATGACGCGC------------TCGACGTTGTC---TCCCCAGATGCCAACAGCAAC 694199 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| |||||||| | |||| | |||| |||||| || Sbjct 694200 ACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAGGTAAGA 694259 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA 1630511 ||| || |||| ||| ||||||||| Sbjct 694260 CCGCTCCAGGGTCTTGAAGCCAAAGTA 694286 Score = 105 bits (116), Expect = 8e-17 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846 ||||||||| ||||| ||||| | |||| || ||| || ||||| ||| | | Sbjct 693104 CGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGG 693163 Query 1627847 GCAGGTCCAT--CATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCG 1627904 ||| | || | || || || || || || ||||| || || || || || || || Sbjct 693164 GCATGCGCAGAGCGAGGAAAGCA--TCAGCCAGACCCTGAACACCAACACCGATGGGGCG 693221 Query 1627905 GTGGCGCAGGTTCGAGTGGCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCG 1627964 |||||||| ||| || ||| ||||||||||| ||||||||||||| || || | ||| Sbjct 693222 GTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATGCG 693281 Query 1627965 GTTGAGGTTGCCCACCACGACCTGGACGATCTCGTGCAG 1628003 ||| ||||||| || || ||| | || ||||||||| Sbjct 693282 GTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAG 693320 >seq58 Length=769140 Score = 145 bits (160), Expect = 9e-29 Identities = 230/323 (71%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| || ||| |||||| |||||||||||||| | |||||||| Sbjct 628494 GCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAGATG 628435 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| | |||||| ||| ||| ||||| | | Sbjct 628434 TTCTCCATGAAGTCAAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGAGCGACC 628375 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||||||||| |||||||||||||| ||| ||| |||||||||||| | Sbjct 628374 AGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGC 628315 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | |||| | | ||||| | |||||| | ||||| ||| |||| Sbjct 628314 AGGGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCGATGGCCACGGCATCGGTGATG 628255 Query 868931 ATCTGCCTGG-GCACGTC--GGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986 || | |||| ||||| || | || | | |||| | | | | |||||||||| Sbjct 628254 AT-TCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTG---GGAGAAGAGCAGGCA 628199 Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008 ||| |||||| ||||| ||||| Sbjct 628198 GGCGAAGTCGGTGTGCAGACCCT 628176 Score = 122 bits (134), Expect = 1e-21 Identities = 179/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||| | ||| || Sbjct 627897 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGCACCTGC 627838 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || ||||||||||| || |||||||| |||||||| Sbjct 627837 ACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGACGCGGCGAAG 627778 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAGTGG 869809 || || || | |||| ||| ||| |||||||| ||| | | ||| ||||| Sbjct 627777 AAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGTTCAGGCGGTTGTTCCAGTCA 627718 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | | || | ||||| | ||||||||| ||||||| ||||||||| ||||| ||| Sbjct 627717 TGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCTCAGCCTTCTTG 627658 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 627657 TACATCTGCCA 627647 Score = 122 bits (134), Expect = 1e-21 Identities = 203/289 (70%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||||| |||||| |||| ||||||||||| | ||||||||| Sbjct 628180 ACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCCGCGCTT 628121 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||| ||| ||||| | |||| || ||| ||||||||||||||||||||||| Sbjct 628120 CTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAA 628061 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGC 869355 | | | || |||| | | || | ||| ||||||| | |||||| || || Sbjct 628060 GGCAACCAGGCGCTGGCCGTAG--GACGA----CTCCTTGTCCTGGATCCAGCGGATGGC 628007 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG-TGGTCCT 869414 |||||||||||| || | | | || | ||||| |||||| |||||| | | Sbjct 628006 CCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGGAACGAGCG 627947 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | | || ||||||| |||||||| || || ||||| |||||||| Sbjct 627946 CTGC-GAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCGAGTAGGTCTC 627899 >seq46 Length=1302616 Score = 131 bits (144), Expect = 2e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| ||||| |||||||| || || ||| |||| |||||| |||| |||||| Sbjct 1109851 GCCTCCAACTATCTCGATATCAAGCCACTCCTTGATGTTGGCTGCAAGACTGTTGCCAAC 1109910 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| || |||||||| || |||||||| ||||||| | ||| Sbjct 1109911 ATGATCAAGGGCAAGTCACCTGAGGAGATTCGTAAGACCTTCAACATCACGAACG 1109965 Score = 102 bits (112), Expect = 1e-15 Identities = 156/217 (72%), Gaps = 9/217 (4%) Strand=Plus/Minus Query 733053 GTCAAGATCGTGACGCGCGCCATGCGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGC 733112 |||||| | |||||| | ||| | ||| ||| |||||||||| | ||||||||| Sbjct 180386 GTCAAGGTGCAGACGCGGCAGACGCGGCGGCCGGAGCTGGGCGACAAGTTCTCGTCGCGC 180327 Query 733113 CACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC--GAGGACATGCCCTGGTCGC 733170 ||||| || |||||| || |||| | | || ||| |||||| |||| | || | Sbjct 180326 CACGGGCAGAAGGGCGTGGTCGGCATCATTG--TCGACCAGGAGGACCTGCCGT--TCTC 180271 Query 733171 CG-CGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATG 733229 || | ||| || |||||||||| | || |||||||||| | |||||||||||||| Sbjct 180270 CGACTCGG--GCATTGTGCCCGACATCATCATGAACCCGCACGGCTTCCCGTCGCGCATG 180213 Query 733230 ACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGG 733266 || | |||||| || ||||| ||| ||||||| Sbjct 180212 ACGGTCGGCAAGCTGATCGAGTGCCTGACCGGCAAGG 180176 >seq68 Length=963626 Score = 118 bits (130), Expect = 1e-20 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| || || ||| ||| | ||| |||| || ||| || || | Sbjct 703128 TCGACGTCGTTCGGAATCGCATAAAGGGCTTCGCGCAAAAGAAAGTCACCCTACCACCGG 703187 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| ||||||| |||||||| |||||| || | || || | |||||||||| Sbjct 703188 GCCGCCACAAGCTGATCATTCTCGACGAAGCCGACAGCATGACCTCTGGCGCCCAGCAGG 703247 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | |||| ||| ||||||| || | ||||| |||||||| || | || |||||| Sbjct 703248 CTTTGCGACGCACAATGGAAATCTACTCGAACACCACGCGCTTCGCGTTTGCTTGCAACC 703307 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCG 1574236 ||| | | |||||||| | |||| |||||| |||||||| ||||| Sbjct 703308 AGTCCAACAAGATCATCGAGCCGCTCC--AGTCGCGGTGCGCCATCCTGCG 703356 >seq54 Length=747515 Score = 93.3 bits (102), Expect = 5e-13 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 1852174 CTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGC 1852233 ||| |||||||| ||||||||||| ||||||||||||||| ||||||||| || | Sbjct 411586 CTTCCGCTGGTCAACACCGCCAAACTGCACGTCGACGTCGAGGTACTGCTCGTCCAGCAC 411645 Query 1852234 CTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCTTGACCACCT 1852292 ||||| | || |||||||| | ||| || | | |||| |||| | |||||| |||| Sbjct 411646 CTGCAGCACCGAGTAGAGCAGGCCGCTGAGCGGGGCGTTGTCGGT-CTGCTTGACGACCT 411704 Query 1852293 GAGCGGCGGCCTT 1852305 ||| ||||||| Sbjct 411705 CGGCGCCGGCCTT 411717 >seq56 Length=737661 Score = 89.7 bits (98), Expect = 6e-12 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGAT-GGCCAGCGGCAGTGCCGACGCCATCTCGCGGTG 1726791 ||||||||||||||||||||||| | || ||| | || ||||||||| ||||||||| Sbjct 317126 CCGTCGGTGCCGTTCTTGAAGCCCACCGGGAAGCTG-AGCCCCGACGCCAGCTCGCGGTG 317184 Query 1726792 CACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCC 1726827 || ||| |||||||| ||||| || ||||| || || Sbjct 317185 CAGCTGACTCTCGGTGGTGCGAGCTCCCACAGCTCC 317220 Score = 86.0 bits (94), Expect = 8e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 344182 GTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACG-TCTGACGAGGC 344240 ||||| ||||| |||||||| || ||||| || ||||||||||| ||| || | ||| Sbjct 335761 GTGGCGTTCCCGACCGAGACGGTGTACGGGCTGGGCGCCGACGCAACGCGCTCGC-CGGC 335819 Query 344241 CGTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGT 344300 ||||| |||||| | | ||||||||| || || |||||||| | || |||||||| Sbjct 335820 GGTGCGCGGCATCTACGCCGCCAAGGGCCGGCCGTCAGACAACCCGCTGATCGTGCACGT 335879 Query 344301 G 344301 | Sbjct 335880 G 335880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107128285397161