Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq60 154 1e-32 seq101 95.1 1e-14 >seq60 Length=1285956 Score = 154 bits (170), Expect = 1e-32 Identities = 968/1532 (63%), Gaps = 72/1532 (5%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || || || || | || || || ||| |||||| |||| | |||||||| Sbjct 692809 ACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATGTTGGAGGTGTACGGCTCAAAG 692868 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||||| || |||||||| | || | || || |||||| |||| || ||| Sbjct 692869 CACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGA 692928 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 || || | ||||||||||||||| | ||||| || ||||||||| | ||| Sbjct 692929 CTGTTGCGAACACCGTGAAGCTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTCG 692988 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCG 138747 | || || |||||||| || |||| | || ||| | ||||| ||| || Sbjct 692989 GTGGGCTTGACATTCCACATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCA 693048 Query 138748 TACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAG 138807 || | ||| || ||| | || | ||| | ||| || ||| | | | Sbjct 693049 TAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACGGAGGCCGACAGAGCAGCGTGG 693108 Query 138808 TAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATG 138867 || || || ||| |||||||| || ||| || ||||||||| ||| | |||||| Sbjct 693109 TAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATG 693168 Query 138868 CGGAGCATCG-TGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCG 138926 || || | || ||| || || ||||| || || || || || |||| ||||| ||||| Sbjct 693169 CGCAG-AGCGAGGAAAGCATCAGCCAGACCCTGAACACCAACACCGATGGGGCGGTGGCG 693227 Query 138927 CAGATTTGACGCTTTTGCG-GCTTCG---ATAGGATAATAGTTTACATCGATGATTTTGT 138982 || || ||| ||||| || ||| | || || | ||| ||||| ||||| || Sbjct 693228 CA----TGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATGCGGT 693283 Query 138983 TTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCC 139041 | | || || || |||||| | || | | | | | | ||||| || || |||| Sbjct 693284 TCAGGTTGCGGACAACCACCATGGT-GACCTCGTGCAGCTTCTCAAAGTCATACACGCCC 693342 Query 139042 CCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACA--AATCGAGGCTATGTTGCACA 139099 ||||| ||| || || | | || | | ||||| | |||||||| Sbjct 693343 TTGTTGTAGTCAAC-----------ATAGGCGGGCAGAGCGAGGGAGGCCAGGTTGCACA 693391 Query 139100 CCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGA 139159 | ||||| || ||||| ||| ||| || | || || | |||| || | | Sbjct 693392 CAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTGGAGCTGCGAA 693451 Query 139160 TCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACG 139219 | ||||| | || | || ||||| || |||||||| || ||||| ||||| | | Sbjct 693452 TGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTCCTTGTACAGCATGAAGG 693511 Query 139220 GTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT-- 139277 | |||| || || || | ||| | ||| | ||| | | ||| | || Sbjct 693512 GGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAGCTTCTGAGCCTTGATGG 693571 Query 139278 --TTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCA 139335 ||| || || | | || ||||||||| ||||| || | ||||| || Sbjct 693572 TCTTG-CGACCG---CGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCG 693627 Query 139336 CCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTC 139395 |||||| ||| | |||| || | |||| || || ||||| || | ||| || ||||| Sbjct 693628 CCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTC 693687 Query 139396 GCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC----GCG 139451 || ||| ||| ||||||| ||||| || ||||||| ||| | | |||||| ||| Sbjct 693688 TTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCG 693747 Query 139452 CG--CCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCA 139509 || ||| || | |||| | | || || || | | ||| || || || || Sbjct 693748 CGGACCTCCTCCT-TTCC--ATGGTTCTTGCG---CAGATCCATGAACTCGAACACATCG 693801 Query 139510 GCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCG 139566 |||||||| || || ||||||||||| | ||||| || |||||||| || || Sbjct 693802 GCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCA 693861 Query 139567 ACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCG 139626 || | || | | || ||||| || || | ||| || | ||| | | || || Sbjct 693862 ACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATACCATTGGACGTGCCA 693921 Query 139627 TTGGTGCTACGG----ATGGGA--CTGTTGCGAGCTCGGACGTCATGTACATTGATGCCG 139680 ||||| | ||| || || | || ||| |||| || ||||||| || Sbjct 693922 TTGGT--TCCGGCAATATAAGAACCAGT----AGCACGGATACGGTGGACATTGAGACCA 693975 Query 139681 ATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATACCTCT 139739 || ||||| | | ||||| || | |||| || | | || || || ||||| Sbjct 693976 ATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTG-AGGGTGTCATAGATACCCTC 694034 Query 139740 TATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCC 139799 |||||||| |||| || ||||| ||||| ||||| || || | | || || Sbjct 694035 AATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCTGGGCCTGCGGGGTACC 694094 Query 139800 GGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGT 139859 || || || || || || || ||||| | | | |||||||| | ||| || Sbjct 694095 AGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGT 694154 Query 139860 TTCGATG--GCGCTC-ACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCAT 139916 || ||| |||||| || | || ||| ||| || |||| || ||||| | ||| Sbjct 694155 CTCAATGACGCGCTCGACGTTGTC---TCCCCAGATGCCAACAGCAACACGCATGATCAT 694211 Query 139917 ATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGG 139974 || ||| || ||| | | | ||| || | || ||| || |||| ||| ||| Sbjct 694212 GTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAGGTAAGACCG--CTCCAGG 694269 Query 139975 GTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 |||||| ||||||||||| |||||||| || Sbjct 694270 GTCTTGAAGCCAAAGTACTGGTAGTTGAAGTC 694301 >seq101 Length=737149 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | | Sbjct 589762 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 589821 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || || || || || ||||| ||||| Sbjct 589822 GATACTATCGATAACGTCAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAG 589881 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| | | | |||| || || ||| Sbjct 589882 CAGCGCCTAATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGACTACAAC 589941 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || || ||||||||| Sbjct 589942 ATCCAGAAAGAGTCCACCCTGCACTTGGTG 589971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896852045240