Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq58 163 4e-34 seq68 141 1e-27 seq46 123 4e-22 seq54 107 3e-17 seq123 102 1e-15 seq60 98.7 2e-14 seq56 98.7 2e-14 seq50 98.7 2e-14 >seq58 Length=769140 Score = 163 bits (180), Expect = 4e-34 Identities = 239/332 (72%), Gaps = 11/332 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||||| |||||| ||| ||||||||||| | ||||||||| Sbjct 628180 ACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCCGCGCTT 628121 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||| ||| ||||| | |||| || ||| ||||||||||||||||||||||| Sbjct 628120 CTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAA 628061 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTT---GATCCACTTCATCGC 794516 | | || || |||| ||| || | | | ||| |||| |||||| || || Sbjct 628060 GGCAACCAGGCGCT-GGCCGTAG-GACGA----CTCCTTGTCCTGGATCCAGCGGATGGC 628007 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| || | | |||| | ||||| |||||| |||||| Sbjct 628006 CCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGGAACGAGCG 627947 Query 794577 CT-CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || ||| || ||||||| ||||||||| ||||| |||||||||||||| |||||||||| Sbjct 627946 CTGCGAG-GGCTCCTTGATGTAGGTGTCAATGAGCAGCGAGTAGGTCTCGGAGTGGATGT 627888 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | || || |||||||||||| || |||||| Sbjct 627887 TCTCCATCATGATCTGGAAGCCGTAGAAGCAG 627856 Score = 149 bits (164), Expect = 1e-29 Identities = 183/250 (73%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| || ||| |||||| |||||||||||||| | | Sbjct 628502 TGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 628443 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | || ||||||| | | ||| ||||||| |||| Sbjct 628442 GCGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGA 628383 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | |||||||||||||||||||| || |||||||| ||| |||| |||||||| Sbjct 628382 GAGCGACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCA 628323 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || |||||| | |||| ||| ||||| | |||||| | ||||| | Sbjct 628322 TGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCGATGGCCACGGCAT 628263 Query 794131 CGATGATGAT 794140 || ||||||| Sbjct 628262 CGGTGATGAT 628253 >seq68 Length=963626 Score = 141 bits (156), Expect = 1e-27 Identities = 193/268 (72%), Gaps = 5/268 (2%) Strand=Plus/Plus Query 2019177 GCTTCG---AAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATG 2019231 |||||| ||||||| || ||| || || |||||||||||| ||||||| ||||| | Sbjct 703155 GCTTCGCGCAAAAGAAAGTCACCCTACCACCGGGCCGCCACAAGCTGATCATTCTCGACG 703214 Query 2019232 AGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACA 2019291 | |||||| || | || || | ||||||||||| | ||| || ||||||| ||| Sbjct 703215 AAGCCGACAGCATGACCTCTGGCGCCCAGCAGGCTTTGCGACGCACAATGGAAATCTACT 703274 Query 2019292 CCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCC 2019351 | ||||| ||||| || ||| | || |||||| ||| | | ||||||| | |||| Sbjct 703275 CGAACACCACGCGCTTCGCGTTTGCTTGCAACCAGTCCAACAAGATCATCGAGCCGCTCC 703334 Query 2019352 AGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTC 2019411 || || ||||||||| |||| | |||| | |||||||| ||| ||| ||| | Sbjct 703335 AGTCGCGGTGCGCCATCCTGCGGTACTCGCGGTTAACCGACGCGCAGGTCGTGAAGCGAC 703394 Query 2019412 TGCGCGAGATTATCGACGCCGAAAAGGT 2019439 ||| |||| ||||| || || ||||| Sbjct 703395 TGCTGCAGATCATCGAGGCGGAGAAGGT 703422 >seq46 Length=1302616 Score = 123 bits (136), Expect = 4e-22 Identities = 337/511 (66%), Gaps = 33/511 (6%) Strand=Plus/Minus Query 653641 GCGCCAGCCCGAGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGG 653700 ||| | ||| ||| |||||||||| | ||||||||||||||||| |||||| || || Sbjct 180363 GCGGCGGCCGGAGCTGGGCGACAAGTTCTCGTCGCGCCACGGGCAGAAGGGCGTGGTCGG 180304 Query 653701 CAGCGTGCGCTCGACC--GAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGAC 653758 || | | |||||| ||||| |||||| || ||| | |||| ||||||| Sbjct 180303 CATCATTG--TCGACCAGGAGGACCTGCCGT--TCTCCGA-CTCGGGCATTGTGCCCGAC 180249 Query 653759 ATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCC 653818 ||| |||| |||||||||| | |||||||||||||||| | |||||| |||| ||| | Sbjct 180248 ATCATCATGAACCCGCACGGCTTCCCGTCGCGCATGACGGTCGGCAAGCTGATCGAGTGC 180189 Query 653819 CTCCTGGGCAAGG---------TGGCCTGCCGCGAGGGCTACG---TGGGCGACGGCACC 653866 || ||||||| ||| | | ||| ||| ||||| | ||||||| Sbjct 180188 CTGACCGGCAAGGCGTCGGTGCTGGACGGGCGCAAGGACTACGGCTTTGGCGACG----- 180134 Query 653867 CCGTTTGGCGGCGTCACC--GTNNNNNNNNNNNNNNNNNAGTTGGCCCGCCACGGGTGCG 653924 |||| ||| |||| || | ||| ||||| | | Sbjct 180133 -CGTT--CCGGTCGCACCCGGTCGAGGAGATGGGGCGGGTGCTGGTGGCGCACGGATTCT 180077 Query 653925 AGCGCTACGGCAAGGAGGTGCTCTACCACCCGCA-CACGGGCGAGCCCATGGAGGCGTTG 653983 | | |||||||| | || || | | | |||||||||||| ||||||||| Sbjct 180076 CTTGGGAGGGCAAGGA-CTACTTCACGTCGGGGATCACGGGCGAGCCGCTGGAGGCGTAC 180018 Query 653984 ATCTTTTCGGCGCCGGTCTACTACCAGGCCCTGCGCCACGTGGCCATCGACAAGATCCAC 654043 |||| | |||| ||||||||||| ||| ||| ||| |||||||| ||| Sbjct 180017 ATCTACAACGGGCCGATCTACTACCAGCGGCTGAAGCACATGGTGCAGGACAAGATGCAC 179958 Query 654044 GCCCGGCCGCGCGGCCCCGTGC-AGATGCTCACCAAGCAGCCGGTCGAGGGCCGGTCGCG 654102 | ||| || ||| |||| || || || || ||||||| |||||||||||||| Sbjct 179957 TCGCGGTCG-ACGGGCCCGCGCGCGAGCCTGACGCGGCAGCCGACGGAGGGCCGGTCGCG 179899 Query 654103 CTCGGGCGGCTTTCGCCTCGGAGAGATGGAG 654133 | ||||||| | || || || ||||||||| Sbjct 179898 CGAGGGCGGCCTGCGGCTGGGCGAGATGGAG 179868 Score = 118 bits (130), Expect = 2e-20 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| ||||| |||||||| ||||| ||| | || |||||||| || |||||| Sbjct 1109851 GCCTCCAACTATCTCGATATCAAGCCACTCCTTGATGTTGGCTGCAAGACTGTTGCCAAC 1109910 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| || ||||| || || |||||||| ||||||| | ||| Sbjct 1109911 ATGATCAAGGGCAAGTCACCTGAGGAGATTCGTAAGACCTTCAACATCACGAACG 1109965 >seq54 Length=747515 Score = 107 bits (118), Expect = 3e-17 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 2411517 CTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGC 2411576 ||| |||||||| ||||||||||| ||||||||||||||| ||||||||| || | Sbjct 411586 CTTCCGCTGGTCAACACCGCCAAACTGCACGTCGACGTCGAGGTACTGCTCGTCCAGCAC 411645 Query 2411577 CTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGACCACCT 2411635 ||||| | || ||||| ||| ||||||||| | |||| |||| | |||||| |||| Sbjct 411646 CTGCAGCACCGAGTAGAGCAGGCCGCTGAGCGGGGCGTTGTCGGT-CTGCTTGACGACCT 411704 Query 2411636 GGGCGGCGGCCTT 2411648 |||| ||||||| Sbjct 411705 CGGCGCCGGCCTT 411717 >seq123 Length=451977 Score = 102 bits (112), Expect = 1e-15 Identities = 300/455 (66%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 2175039 GCGGCGGTGCGCACGGCATCGAGCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAAAC 2175098 || |||| || | |||||||| || ||| | | |||||||||||||| || || Sbjct 265374 GCAGCGGCGCCAATGGCATCGATAGCAACACCCAGGTTACCGTCGGTGCCGTTCTTGAAG 265315 Query 2175099 CCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGC 2175158 ||||| || || | ||| | || |||| || ||||| | |||| |||||||||||| Sbjct 265314 CCGACAGGGAAAGACAGGCCAGAGGCCAGCTCACGGTGTAGCTGGGACTCGGTGGTGCGG 265255 Query 2175159 GCGCCCACGGCGCCCCACGCCACGAGGTCTGCCA--AATAGGGCGCCACCAAAGGGCTGA 2175216 || || | |||||| || | || ||| || | || ||| | | | | || Sbjct 265254 GCACCGATGGCGCCGACCGAGATGAAGTCAGCGAGGAACTGGGGGGAG--ATGGTGTCGA 265197 Query 2175217 GAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAGGTCGCGCAGCAGTCGACGCG 2175276 | | ||| || | |||| |||| | || |||||||| | || | | || Sbjct 265196 GCATTTCGCTGGCAATGGGCATGCCGCTGGCGGT---CAGGTCGCTGAAGAGCTGTCTCG 265140 Query 2175277 ATGTGGCGAGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGC 2175336 | |||||| | | | | ||| || || ||||||||| || ||| | Sbjct 265139 ACACACGGAGGCCCTTGTTGATCTTGAAGGACGAGTTGATATCGGGGTCGTTGATCAGAC 265080 Query 2175337 CCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACCAGGAGAG 2175396 ||||||| |||||||| ||||| ||||| |||| |||||||||||||| | || || Sbjct 265079 CCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGAGGTAGGCGCGCATGACAATCACTAGGT 265020 Query 2175397 CGTCGCCGACCTCTGTCTCGGCAAAGGTGC-GCAGCCGTCGGCCATACTCGACGATGGCC 2175455 ||||| ||| ||| |||| || ||| || || | | ||||||||| | |||| Sbjct 265019 CGTCG--GACAGCTG-GGCGGC-GAGCTGCTTTAGGCGACCGGCATACTCGAGGGCGGCC 264964 Query 2175456 TGGGGATCGTGCGCCGAACACGGACCGACGACCAC 2175490 | ||| ||||| || || || ||||||||||| Sbjct 264963 TCGGGGTCGTGGAGGGAGCAGGGGCCGACGACCAC 264929 >seq60 Length=1285956 Score = 98.7 bits (108), Expect = 2e-14 Identities = 176/254 (69%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 2069991 GCCCTCATAGTAGGACGGATAGGGTCCCTCCTTTGCGGCCAGTTGTGCCGACGCCGTCGC 2070050 |||||||||| ||| |||| |||||||| ||| | | | || |||| | Sbjct 693042 GCCCTCATAGGTGGAG---TAGGTTCCCTCCTCCTTGGCGATCTCCACGGAGGCCGACAG 693098 Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCT 2070109 || || |||||||| ||||| ||||| ||| |||| || || || ||||| || Sbjct 693099 AGCAGCGTGGTAGATGGTCTCGAAGATC-TGCTGGTTCAGCTCCCGAGCCTCGGCGGACT 693157 Query 2070110 CCCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCG 2070169 | | |||| | || | || || || ||||| ||||| || || || || || | Sbjct 693158 CAAAGGGCATGCGCAGAGCGAGGAAAGCATCAGCCAGACCCTGAACACCAACACCGATGG 693217 Query 2070170 GCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCA 2070229 | |||||||||| ||| || || ||||||||||| ||||||||||||| || || | Sbjct 693218 GGCGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGA 693277 Query 2070230 CGCGGTTGAGGTTG 2070243 |||||| |||||| Sbjct 693278 TGCGGTTCAGGTTG 693291 >seq56 Length=737661 Score = 98.7 bits (108), Expect = 2e-14 Identities = 104/135 (77%), Gaps = 9/135 (7%) Strand=Plus/Plus Query 2175047 GCGCACGGCATCGA--GCGCCGTTG-CCACGCTG------CCGTCGGTGCCGTTTTTAAA 2175097 |||||| ||| ||| ||| || || |||||||| |||||||||||||| || || Sbjct 317086 GCGCACAGCACCGATGGCGTCGATGGCCACGCTGAGCGAGCCGTCGGTGCCGTTCTTGAA 317145 Query 2175098 CCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCG 2175157 || ||||| || ||| ||||||||| |||||||||| ||| |||||||||||||| Sbjct 317146 GCCCACCGGGAAGCTGAGCCCCGACGCCAGCTCGCGGTGCAGCTGACTCTCGGTGGTGCG 317205 Query 2175158 CGCGCCCACGGCGCC 2175172 || ||||| || || Sbjct 317206 AGCTCCCACAGCTCC 317220 >seq50 Length=145411 Score = 98.7 bits (108), Expect = 2e-14 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||| ||||| ||||| |||||||| || ||||||||| |||| ||||| ||| | | Sbjct 27464 GTACTTAGTGACAGCCTTAGTACCCTCAGAAACGGCGTGCTTGGCAAGTTCACCGGGAAG 27405 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT 1485572 ||||||||| || | |||||||||||| || | || ||| || Sbjct 27404 GATCAGGCGAACAGAGGTCTGGATCTCTCGCGAGCTGATAGT 27363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916232252183387