Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq60 152 5e-32 seq58 113 4e-20 seq101 98.7 9e-16 >seq60 Length=1285956 Score = 152 bits (168), Expect = 5e-32 Identities = 1103/1750 (63%), Gaps = 69/1750 (4%) Strand=Plus/Plus Query 146695 TGATCTATGAAAGCGTTGCGGTCGGCCGCCATCT---CAATCATGCGTTTTGTCTTCATT 146751 || || |||||||| |||||||| ||||||| ||| |||| | | ||| Sbjct 692605 TGGTCAATGAAAGCACCACGGTCGGCTGCCATCTGCACAACAGTGCGCTGGGAA---ATT 692661 Query 146752 TCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATA 146811 ||||| | || |||||||| |||| | | | | || || | ||||||| || || Sbjct 692662 TCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGCTGGCAATGTTCTGGATC 692721 Query 146812 GAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAAAGGTTTAGTTTAAT 146870 ||||| |||| |||| || | | ||| | || | || | ||| || | | Sbjct 692722 GAGCCGTTGTCGGCAATGAT-GCGGTTCTTCATCGAGTCCGACCACAGGCCAAGGTCGAC 692780 Query 146871 GAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAG 146930 ||| || | || || | |||||||| || ||||| || || |||||||| | | Sbjct 692781 GAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTG 692840 Query 146931 ATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGT 146990 || | ||| ||| | |||||||| |||| || ||||| | || || | || | Sbjct 692841 GTAGATGTTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACT 692900 Query 146991 TGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGT-ACGCACGGATGTTGT 147049 || || |||||| |||| || || || || | ||||| | || | || | | Sbjct 692901 GGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTG-ATCTGCT 692959 Query 147050 CCTTCAAAGTTTGCCAGTCCCACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTG 147107 |||||| | | ||||||||| | ||| | |||| | || ||||||||||| |||| Sbjct 692960 CCTTCAGGCTATCCCAGTCCCAGAGGTCG--GTGGGCTTGACATTCCACATGTCAAACTG 693017 Query 147108 GAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGC 147167 || | || || | ||||| ||| | | || | |||| |||| || || || Sbjct 693018 CAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGC 693077 Query 147168 CAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG 147227 | || | ||| || || | | ||| ||||| ||| ||| || | ||| || Sbjct 693078 GATCTCCACGGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAG 693137 Query 147228 GACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACC 147287 | || || || ||| | ||||| |||||| | || ||||| |||| ||| Sbjct 693138 CTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCAGCCAGACC 693197 Query 147288 CTGGATACCGACGCCGATAGGTCGAT---GCTTTTCGTTGCTGC--GCTTCGCGCTCGCT 147342 ||| | ||| || ||||| || || | || | | | || ||| || ||| || Sbjct 693198 CTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGC----- 693252 Query 147343 ATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATT 147402 | ||| ||||||||| |||||| || ||| ||||| || || || || | || | Sbjct 693253 ACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACC 693312 Query 147403 GTTTTGAGTTTCTCGAAATCATA-AGTCCCGTCTTCGACACGTACGCATTG--GTTCACG 147459 | || ||||| || ||||| | ||| | || | || ||| | | || Sbjct 693313 TCGTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTA---GTCAACATAGGCGGGCAGA 693369 Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519 |||| || ||||| ||||| || ||| ||| |||| ||| ||||| | ||| || Sbjct 693370 GCGAGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCA 693429 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579 | |||||||||| || ||| |||| || | ||| ||||| || || || || Sbjct 693430 GTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAG 693489 Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAAC 147636 ||| ||| | |||||| | || |||||||||| || | || | ||| | || Sbjct 693490 TGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATAC 693549 Query 147637 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCG 147696 | ||| | ||| || | || ||| ||| ||||| |||||| |||| Sbjct 693550 C---ACAGCTTCTGAGCCTTGATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCG 693606 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 |||| ||| ||||| ||||||||||| |||||||| ||||| |||| | || ||| Sbjct 693607 TACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCAC 693666 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 ||||| | |||| | ||| | | || || ||| || ||||| || | |||||| Sbjct 693667 ATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGA 693726 Query 147817 GC---GTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATG----TTGCGTTTCAA 147869 || | ||| || || |||| | ||||| ||||| ||||| || Sbjct 693727 GCCAGGAACA-AATCTCTGGCGC--GGACCTCCTC-CTTTCCATGGTTCTTGCG---CAG 693779 Query 147870 AT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTT 147928 || | | || | | | | ||||||||||| || || | |||| ||| | || || Sbjct 693780 ATCCATGAACTCGA-ACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGG 693838 Query 147929 TACGC---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGG 147985 ||| || || |||||||| |||| |||| | ||||||| ||||| || | ||||| Sbjct 693839 GGCGCTTGTTGCCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGG 693898 Query 147986 GTTCCAGGCCGCTCGCAGTGCCGTTGGT---GGAATTGATCTTGCTGCCGCGGGCTCGCA 148042 | | || | | ||||| ||||| || | || | || || || | Sbjct 693899 GGATGATACCATTGGACGTGCCATTGGTTCCGGCA---ATATAAGAACCAGTAGCACGGA 693955 Query 148043 CTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCC 148101 ||| || || | ||||||||||| ||| | ||| || || ||||| Sbjct 693956 TACGGTGGACATTGAGACCAATGCCGCCAGCCAT-CTTGGAGATCATGGCGCAGGTCTTG 694014 Query 148102 AATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACAC 148161 | || ||||| || || |||||||| | || | ||| || || ||||| | Sbjct 694015 AGGGTGTCATAGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAG 694074 Query 148162 ATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT- 148220 | || | | | || || || ||| |||||||| || || || || || || Sbjct 694075 AGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTG 694134 Query 148221 -TTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCA 148279 | || ||||| | || |||||||| || |||| || ||| || ||||| | Sbjct 694135 CTGGA--CATCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCCCAGATGCCAA 694192 Query 148280 GCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGA 148338 || || ||||||| ||||||||| || || ||| ||| |||| || | |||||| Sbjct 694193 CAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTG-CCGTCAAGCTTGAGC 694251 Query 148339 AGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAA 148398 || || || ||||| ||| | |||||||||| ||| | || || | ||||| Sbjct 694252 AGGTAAGACCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCGTAG 694311 Query 148399 GCGATGGCCG 148408 | ||||||| Sbjct 694312 ACAATGGCCG 694321 >seq58 Length=769140 Score = 113 bits (124), Expect = 4e-20 Identities = 248/365 (68%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 46908 GGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACAC 46967 ||||| ||||| |||||||| ||| |||||| |||||||||| ||||| || || ||| Sbjct 628127 GGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGTCTGCAC 628186 Query 46968 ACGGACTTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACAC 47026 || ||||| || || || || || | | | | || | | | |||| Sbjct 628187 ACCGACTTCGCCTGCCTGCTCTTCT----CCCACCTCAAGCACCGCCCCAGCAAGGACGT 628242 Query 47027 GATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCT 47086 |||| ||| || | | || || ||| |||||| ||||||| | || | ||| || Sbjct 628243 CATCCAGAGAATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCT 628302 Query 47087 GCCCGTCGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGG 47145 |||| |||| |||||||||||||||| || || ||| | || || ||||| || | Sbjct 628303 GCCCTGCGCCCTGCTGGGCATGAACGC-CACCCTGATGAAGCAGTACATCGAGTTCGTCG 628361 Query 47146 CGGATCGTCTGTTGGTGCAGCTCGGACAAC-CGAAATATTTTAATGCTCGTAATCCGTTT 47204 | || || ||| |||| ||||| |||| ||| | || || || || ||| Sbjct 628362 CCGACCGCCTGCTGGTCGCTCTCGG-CAACGAGAAGGTGTACAAGGCCACCAACCCCTTT 628420 Query 47205 GAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGA 47264 || || ||| | ||||| ||||| | ||||| ||||| || |||||||| || || || Sbjct 628421 GACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGC 628480 Query 47265 GAGTA 47269 || || Sbjct 628481 GACTA 628485 >seq101 Length=737149 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | |||||||| || ||||||||||| || ||| || ||| || Sbjct 589970 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTCA 589911 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | | ||||||| ||||| ||||| ||||| ||||| || ||||| Sbjct 589910 AGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGG 589851 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | |||||| | || |||||| |||| || | || || Sbjct 589850 ATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACCTCGAGGGTGATGGTCTTG 589791 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | ||| |||||||| Sbjct 589790 CCGGTGAGGGTCTTGACGAAGATCTGCAT 589762 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | | ||||| || || ||||||||||| || ||| Sbjct 590211 ACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 590152 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || || | |||| |||||||| ||||| || || ||||| Sbjct 590151 GCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCC 590092 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| || || |||| | || | ||||| | || ||| || || | Sbjct 590091 CTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACCTCCAG 590032 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | |||||||||||| Sbjct 590031 AGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610407633880