Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq58 208 1e-47 seq60 159 5e-33 seq46 122 1e-21 seq56 98.7 1e-14 seq68 87.8 3e-11 >seq58 Length=769140 Score = 208 bits (230), Expect = 1e-47 Identities = 361/512 (71%), Gaps = 22/512 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| || ||||| ||||||||| |||||| Sbjct 627643 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACC 627701 Query 1455835 TCGGCGCCGACACGGTCCA---CTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCA 1455888 | | || | |||| |||| ||| ||| ||| |||||||| |||| Sbjct 627702 TGTCCAAGGATA---TCCATGACTGGAACAACCGCCTGAACGATGACGAGCGTTTCTTCA 627758 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || |||| | || ||||| || |||||| || ||||| || ||||||||||| | Sbjct 627759 TCTCGCACATTCTTGCCTTCTT-CGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTC 627817 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | ||||| || |||| ||||| || | || ||||| ||||||||| Sbjct 627818 GAGCGTTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATC 627877 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || ||||||||||| || || ||||||||| ||||||| Sbjct 627878 ATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAG 627937 Query 1456069 CCGGTCG-AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || ||| || |||||| |||||| ||||| | || | | | || || Sbjct 627938 CC-CTCGCAGCGCTCGTTCCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAA 627996 Query 1456128 GGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 |||||||||||| || |||||| |||||||| ||| | || | | |||| Sbjct 627997 GGCCGACTGGGCCATCCGCTGGATCCAGGACAAGGAG----TCGTC-CTACGGCCAGCGC 628051 Query 1456185 CTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243 || || | |||||||| ||||||||||||||| ||| || |||| | ||||| Sbjct 628052 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 628111 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||| | |||||||| || Sbjct 628112 TGGGTCAAGAAGCGCGGCATGATGCCCGGCCT 628143 Score = 127 bits (140), Expect = 3e-23 Identities = 183/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| ||||| | |||||| | ||||| ||| |||| | ||||| || Sbjct 628253 ATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCC 628312 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||||||||| || ||| |||||||| | | || ||||||||||||| Sbjct 628313 CTGCTGGGCATGAACGCCACC-CTGATGAAGCAGTACATCG-AGTTCGTCGCCGACCGCC 628370 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| | |||||| ||| | | ||||||| || | ||| Sbjct 628371 TGCTGGTCGCTCTCGGCAAC-GAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATG 628429 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| |||||||| | |||||||||||||| |||||| || | |||||| ||| Sbjct 628430 GAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAG 628489 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 628490 AAGGCTGGTGTCA 628502 >seq60 Length=1285956 Score = 159 bits (176), Expect = 5e-33 Identities = 339/502 (68%), Gaps = 17/502 (3%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 || ||||||| || ||| | ||||| | ||| ||| ||||| |||| ||||||| Sbjct 694340 CATAAGGAGGAGCTGGACTCGGCCATTGTCTACGACCGGGACTTCAACTACCAGTACTTT 694281 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 || | |||| || ||||| |||||| ||| | || | | |||||||| Sbjct 694280 GGCTTCAAGACCCTGGAGCGGTCTTACCTGCTCAAGCTTGACGGCAAGATTGTCGAGCGC 694221 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861 |||||| | ||| |||||||||| || ||||| | |||| || ||||| Sbjct 694220 CCCCAGCACATGATCATGCGTGTTGCTGTTGGCA--TCTGGG------GA----GACAAC 694173 Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGC 259920 | | |||| ||| | | |||||| | ||||| ||||| ||| |||||| || Sbjct 694172 G---TCGAGCGCGTCATTGAGACCTACAACTTGATGTC-CAGCAAGTTCTTCACCCATGC 694117 Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980 | ||||| ||||| || || || || |||| | ||| ||||||||||| ||| | Sbjct 694116 CTCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGT 694057 Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040 || || |||| || || ||||| ||||||||||| |||||| ||||| | || Sbjct 694056 TGATATAAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGAT 693997 Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100 ||||||| ||| |||||||| ||| | | ||| | || || | || | || Sbjct 693996 CTCCAAGATGGCTGGCGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACTGGTTCTTA 693937 Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | || || ||||| ||| |||||| || | | ||||||||||| || || ||| | Sbjct 693936 TATTGCCGGAACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGAGTGTTCAACAA 693877 Query 260161 CACGGCGCGCTACGTCGACCAG 260182 ||| |||||||| || |||||| Sbjct 693876 CACCGCGCGCTATGTTGACCAG 693855 Score = 89.7 bits (98), Expect = 7e-12 Identities = 125/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| ||||| ||| ||| || | ||||||||||| |||| |||| | ||||||||| Sbjct 693551 TGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGAC 693492 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214 | |||| | ||||||||| |||||||||| |||| || ||| ||||||||| Sbjct 693491 CACTGTAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCG-CAG-CTCCAACCTGT 693434 Query 262215 GCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT 262266 |||| |||||| | ||| | | ||| |||| |||||||||||| Sbjct 693433 GCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTGTGTGCAACCT 693382 >seq46 Length=1302616 Score = 122 bits (134), Expect = 1e-21 Identities = 360/539 (67%), Gaps = 41/539 (8%) Strand=Plus/Plus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 ||||||||| || || || | ||||||| |||||| |||||||| ||||||| || Sbjct 179868 CTCCATCTCGCCCAGCCGCAGGCCGCCCTCGCGCGACCGGCCCTCCGTCGGCTGCCGCGT 179927 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGG-GCGTGAATCTTGTCGATGGCCACGTGGCGCA 1600376 || || | ||||| ||| | | | | ||| |||||||| ||| ||| || Sbjct 179928 CAGGCTCGCGCGCGGGCC-CGTCGACCGCGAGTGCATCTTGTCCTGCACCATGTGCTTCA 179986 Query 1600377 GGGCCTGGTAGTAGACCGGCGCCGTAAAGATCAACGCCTCCATGGGCTCGCCGGTG-TGC 1600435 | ||||||||||| |||| | | |||| ||||||||| |||||||| ||| | | Sbjct 179987 GCCGCTGGTAGTAGATCGGCCCGTTGTAGATGTACGCCTCCAGCGGCTCGCCCGTGATCC 180046 Query 1600436 GGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTG-GCGAGCCAACTCGGCGGC 1600494 | || || | |||||||| | | | ||||||| || | ||| | | | || Sbjct 180047 CCGACGTGAAGTAG-TCCTTGCCCTCCCAAGAGAATCCGTGCGCCA-CCAGCAC--CCGC 180102 Query 1600495 GACATCG--TCGAC--GGTGACGCCGCCAAAGGGCGTGCCGTCGCCCA---CATAGCCCT 1600547 |||| ||||| |||| ||| | || ||||||| | | ||| ||| Sbjct 180103 CCCATCTCCTCGACCGGGTGCGACCGGAA-----CG---CGTCGCCAAAGCCGTAGTCCT 180154 Query 1600548 CGCGGCAGGCCA---------CCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCA 1600598 ||| | | ||| ||||||| ||| ||| |||| |||||| | |||| Sbjct 180155 TGCGCCCGTCCAGCACCGACGCCTTGCCGGTCAGGCACTCGATCAGCTTGCCGACCGTCA 180214 Query 1600599 TGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGC- 1600657 |||||||||||| | |||||||||| || | ||||||||| || ||| |||| | Sbjct 180215 TGCGCGACGGGAAGCCGTGCGGGTTCATGATGATGTCGGGC---ACAATGCC-CGAGTCG 180270 Query 1600658 GACCAGGGCATGTCCTC--GGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGC 1600715 || | |||| |||||| ||| || | | |||| || |||||| || ||||||| Sbjct 180271 GAGAACGGCAGGTCCTCCTGGTCGA--CAATGATGCCGACCACGCCCTTCTGCCCGTGGC 180328 Query 1600716 GCGACGACAGTTTGTCGCCCACCTCGGGCTGGCGCATGGCCCGCGTGACGATCTTGACC 1600774 ||||||| | |||||||||| ||| ||| | ||| | |||||| | ||||||| Sbjct 180329 GCGACGAGAACTTGTCGCCCAGCTCCGGCCGCCGCGTCTGCCGCGTCTGCACCTTGACC 180387 >seq56 Length=737661 Score = 98.7 bits (108), Expect = 1e-14 Identities = 106/136 (78%), Gaps = 11/136 (8%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 || || || || || |||||||||||||| ||| ||||||||||| ||||||||| ||| Sbjct 317220 GGAGCTGTGGGAGCTCGCACCACCGAGAGTCAGCTGCACCGCGAGCTGGCGTCGGGGCT- 317162 Query 165828 CCGCTGCCCATTGG-CTTCAAAAACAGCACCGACGG------CAGCGTGGCGA-CG--GC 165877 | ||| ||| ||| |||||| ||| |||||||||| ||||||||| | || || Sbjct 317161 CAGCTTCCCGGTGGGCTTCAAGAACGGCACCGACGGCTCGCTCAGCGTGGCCATCGACGC 317102 Query 165878 CCTCGATGCCGTGCGC 165893 | ||| ||| |||||| Sbjct 317101 CATCGGTGCTGTGCGC 317086 >seq68 Length=963626 Score = 87.8 bits (96), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 332516 CCGCATCCCGTGTGCGTGGCATCAAGGTTGTTGATGGCCTGGCGCATGTCGCCGTCGGCC 332575 ||| |||| | |||||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 703521 CCGAATCCGGCGTGCGTGGACTGCAGGTTGTTGATGGCCTGGCGCATGTCGCCCTCGGCA 703462 Query 332576 GTGAGCACGATCGCTTCCAGGCCCTCGTCGGTGCACACCAC 332616 ||| ||| | ||| | || || |||||| || || |||| Sbjct 703461 CTGAACACCAGCGCCGCAAGCCCGTCGTCGCTGTACTCCAC 703421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177798371905546