Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq58 208 1e-47
seq60 159 5e-33
seq46 122 1e-21
seq56 98.7 1e-14
seq68 87.8 3e-11
>seq58
Length=769140
Score = 208 bits (230), Expect = 1e-47
Identities = 361/512 (71%), Gaps = 22/512 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||| |||||||| || ||||| ||||||||| ||||||
Sbjct 627643 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACC 627701
Query 1455835 TCGGCGCCGACACGGTCCA---CTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCA 1455888
| | || | |||| |||| ||| ||| ||| |||||||| ||||
Sbjct 627702 TGTCCAAGGATA---TCCATGACTGGAACAACCGCCTGAACGATGACGAGCGTTTCTTCA 627758
Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948
|| |||| | || ||||| || |||||| || ||||| || ||||||||||| |
Sbjct 627759 TCTCGCACATTCTTGCCTTCTT-CGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTC 627817
Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
| || || | ||||| || |||| ||||| || | || ||||| |||||||||
Sbjct 627818 GAGCGTTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATC 627877
Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068
|| || ||||||||||| || ||||||||||| || || ||||||||| |||||||
Sbjct 627878 ATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAG 627937
Query 1456069 CCGGTCG-AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127
|| ||| || |||||| |||||| ||||| | || | | | || ||
Sbjct 627938 CC-CTCGCAGCGCTCGTTCCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAA 627996
Query 1456128 GGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184
|||||||||||| || |||||| |||||||| ||| | || | | ||||
Sbjct 627997 GGCCGACTGGGCCATCCGCTGGATCCAGGACAAGGAG----TCGTC-CTACGGCCAGCGC 628051
Query 1456185 CTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243
|| || | |||||||| ||||||||||||||| ||| || |||| | |||||
Sbjct 628052 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 628111
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| |||||||||||||| | |||||||| ||
Sbjct 628112 TGGGTCAAGAAGCGCGGCATGATGCCCGGCCT 628143
Score = 127 bits (140), Expect = 3e-23
Identities = 183/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| ||| ||||| | |||||| | ||||| ||| |||| | ||||| ||
Sbjct 628253 ATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCC 628312
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | ||||||||||||||| || ||| |||||||| | | || |||||||||||||
Sbjct 628313 CTGCTGGGCATGAACGCCACC-CTGATGAAGCAGTACATCG-AGTTCGTCGCCGACCGCC 628370
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
|||| | || |||||| | |||||| ||| | | ||||||| || | |||
Sbjct 628371 TGCTGGTCGCTCTCGGCAAC-GAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATG 628429
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761
||| |||||||| | |||||||||||||| |||||| || | |||||| |||
Sbjct 628430 GAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAG 628489
Query 1456762 AAGGCCGGCGTCA 1456774
||||| || ||||
Sbjct 628490 AAGGCTGGTGTCA 628502
>seq60
Length=1285956
Score = 159 bits (176), Expect = 5e-33
Identities = 339/502 (68%), Gaps = 17/502 (3%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|| ||||||| || ||| | ||||| | ||| ||| ||||| |||| |||||||
Sbjct 694340 CATAAGGAGGAGCTGGACTCGGCCATTGTCTACGACCGGGACTTCAACTACCAGTACTTT 694281
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801
|| | |||| || ||||| |||||| ||| | || | | ||||||||
Sbjct 694280 GGCTTCAAGACCCTGGAGCGGTCTTACCTGCTCAAGCTTGACGGCAAGATTGTCGAGCGC 694221
Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861
|||||| | ||| |||||||||| || ||||| | |||| || |||||
Sbjct 694220 CCCCAGCACATGATCATGCGTGTTGCTGTTGGCA--TCTGGG------GA----GACAAC 694173
Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGC 259920
| | |||| ||| | | |||||| | ||||| ||||| ||| |||||| ||
Sbjct 694172 G---TCGAGCGCGTCATTGAGACCTACAACTTGATGTC-CAGCAAGTTCTTCACCCATGC 694117
Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980
| ||||| ||||| || || || || |||| | ||| ||||||||||| ||| |
Sbjct 694116 CTCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGT 694057
Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040
|| || |||| || || ||||| ||||||||||| |||||| ||||| | ||
Sbjct 694056 TGATATAAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGAT 693997
Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100
||||||| ||| |||||||| ||| | | ||| | || || | || | ||
Sbjct 693996 CTCCAAGATGGCTGGCGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACTGGTTCTTA 693937
Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160
| || || ||||| ||| |||||| || | | ||||||||||| || || ||| |
Sbjct 693936 TATTGCCGGAACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGAGTGTTCAACAA 693877
Query 260161 CACGGCGCGCTACGTCGACCAG 260182
||| |||||||| || ||||||
Sbjct 693876 CACCGCGCGCTATGTTGACCAG 693855
Score = 89.7 bits (98), Expect = 7e-12
Identities = 125/172 (73%), Gaps = 4/172 (2%)
Strand=Plus/Minus
Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156
|||| ||||| ||| ||| || | ||||||||||| |||| |||| | |||||||||
Sbjct 693551 TGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGAC 693492
Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214
| |||| | ||||||||| |||||||||| |||| || ||| |||||||||
Sbjct 693491 CACTGTAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCG-CAG-CTCCAACCTGT 693434
Query 262215 GCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT 262266
|||| |||||| | ||| | | ||| |||| ||||||||||||
Sbjct 693433 GCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTGTGTGCAACCT 693382
>seq46
Length=1302616
Score = 122 bits (134), Expect = 1e-21
Identities = 360/539 (67%), Gaps = 41/539 (8%)
Strand=Plus/Plus
Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317
||||||||| || || || | ||||||| |||||| |||||||| ||||||| ||
Sbjct 179868 CTCCATCTCGCCCAGCCGCAGGCCGCCCTCGCGCGACCGGCCCTCCGTCGGCTGCCGCGT 179927
Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGG-GCGTGAATCTTGTCGATGGCCACGTGGCGCA 1600376
|| || | ||||| ||| | | | | ||| |||||||| ||| ||| ||
Sbjct 179928 CAGGCTCGCGCGCGGGCC-CGTCGACCGCGAGTGCATCTTGTCCTGCACCATGTGCTTCA 179986
Query 1600377 GGGCCTGGTAGTAGACCGGCGCCGTAAAGATCAACGCCTCCATGGGCTCGCCGGTG-TGC 1600435
| ||||||||||| |||| | | |||| ||||||||| |||||||| ||| | |
Sbjct 179987 GCCGCTGGTAGTAGATCGGCCCGTTGTAGATGTACGCCTCCAGCGGCTCGCCCGTGATCC 180046
Query 1600436 GGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTG-GCGAGCCAACTCGGCGGC 1600494
| || || | |||||||| | | | ||||||| || | ||| | | | ||
Sbjct 180047 CCGACGTGAAGTAG-TCCTTGCCCTCCCAAGAGAATCCGTGCGCCA-CCAGCAC--CCGC 180102
Query 1600495 GACATCG--TCGAC--GGTGACGCCGCCAAAGGGCGTGCCGTCGCCCA---CATAGCCCT 1600547
|||| ||||| |||| ||| | || ||||||| | | ||| |||
Sbjct 180103 CCCATCTCCTCGACCGGGTGCGACCGGAA-----CG---CGTCGCCAAAGCCGTAGTCCT 180154
Query 1600548 CGCGGCAGGCCA---------CCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCA 1600598
||| | | ||| ||||||| ||| ||| |||| |||||| | ||||
Sbjct 180155 TGCGCCCGTCCAGCACCGACGCCTTGCCGGTCAGGCACTCGATCAGCTTGCCGACCGTCA 180214
Query 1600599 TGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGC- 1600657
|||||||||||| | |||||||||| || | ||||||||| || ||| |||| |
Sbjct 180215 TGCGCGACGGGAAGCCGTGCGGGTTCATGATGATGTCGGGC---ACAATGCC-CGAGTCG 180270
Query 1600658 GACCAGGGCATGTCCTC--GGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGC 1600715
|| | |||| |||||| ||| || | | |||| || |||||| || |||||||
Sbjct 180271 GAGAACGGCAGGTCCTCCTGGTCGA--CAATGATGCCGACCACGCCCTTCTGCCCGTGGC 180328
Query 1600716 GCGACGACAGTTTGTCGCCCACCTCGGGCTGGCGCATGGCCCGCGTGACGATCTTGACC 1600774
||||||| | |||||||||| ||| ||| | ||| | |||||| | |||||||
Sbjct 180329 GCGACGAGAACTTGTCGCCCAGCTCCGGCCGCCGCGTCTGCCGCGTCTGCACCTTGACC 180387
>seq56
Length=737661
Score = 98.7 bits (108), Expect = 1e-14
Identities = 106/136 (78%), Gaps = 11/136 (8%)
Strand=Plus/Minus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|| || || || || |||||||||||||| ||| ||||||||||| ||||||||| |||
Sbjct 317220 GGAGCTGTGGGAGCTCGCACCACCGAGAGTCAGCTGCACCGCGAGCTGGCGTCGGGGCT- 317162
Query 165828 CCGCTGCCCATTGG-CTTCAAAAACAGCACCGACGG------CAGCGTGGCGA-CG--GC 165877
| ||| ||| ||| |||||| ||| |||||||||| ||||||||| | || ||
Sbjct 317161 CAGCTTCCCGGTGGGCTTCAAGAACGGCACCGACGGCTCGCTCAGCGTGGCCATCGACGC 317102
Query 165878 CCTCGATGCCGTGCGC 165893
| ||| ||| ||||||
Sbjct 317101 CATCGGTGCTGTGCGC 317086
>seq68
Length=963626
Score = 87.8 bits (96), Expect = 3e-11
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 332516 CCGCATCCCGTGTGCGTGGCATCAAGGTTGTTGATGGCCTGGCGCATGTCGCCGTCGGCC 332575
||| |||| | |||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 703521 CCGAATCCGGCGTGCGTGGACTGCAGGTTGTTGATGGCCTGGCGCATGTCGCCCTCGGCA 703462
Query 332576 GTGAGCACGATCGCTTCCAGGCCCTCGTCGGTGCACACCAC 332616
||| ||| | ||| | || || |||||| || || ||||
Sbjct 703461 CTGAACACCAGCGCCGCAAGCCCGTCGTCGCTGTACTCCAC 703421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177798371905546
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |