Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq101 107 2e-18 seq94 95.1 1e-14 seq60 91.5 1e-13 >seq101 Length=737149 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||||| || || || ||||||||||| Sbjct 589988 CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 589929 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| || | ||||||||||| || || Sbjct 589928 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGA 589869 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | || || ||||| ||||| Sbjct 589868 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACC 589809 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 589808 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||| ||||| || ||||||||||| | |||| | Sbjct 590207 AGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 590148 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || || || || | |||||||||||| || || ||||| || Sbjct 590147 CCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCC 590088 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || ||| | || || ||||| || || || ||||| Sbjct 590087 TTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACCTCCAGAGTG 590028 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || |||||||| ||||| Sbjct 590027 ATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||| ||||| || |||||||||||| || ||| | || ||| Sbjct 590426 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 590367 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || ||||||| |||||||| || || || ||||| || || || ||| Sbjct 590366 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGA 590307 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | || || || |||||||| || | ||||| || || Sbjct 590306 ATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTCTTT 590247 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || ||||| || ||||| Sbjct 590246 CCCGTCAGAGTCTTCACGAAGATCTGCAT 590218 >seq94 Length=69539 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| || |||| | || || ||||| ||||| ||||||| Sbjct 45450 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 45509 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||| || || || || ||||| || || || || || || ||||| || Sbjct 45510 TCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 45569 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | || || || || ||||| || || || || || || || || | || || |||| Sbjct 45570 CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGA 45629 Query 134704 AAATTTGCAT 134713 |||| ||||| Sbjct 45630 AAATCTGCAT 45639 >seq60 Length=1285956 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| |||| ||| | ||| ||||| | || | |||||||||||| ||| || Sbjct 693545 GCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGACCACTGT 693486 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| ||| ||||| || | ||| |||| |||||| | || ||| |||||| |||| Sbjct 693485 AACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCGCAGCTCCAACCTGTGCACTGAG 693426 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 || | ||||| |||| ||||| || ||||| || ||||| || || || Sbjct 693425 ATCATTGAGTACTGCGCTCCCGATGAGGTGGCTGTGTGCAACCTGGCCTC 693376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397559775160