Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq101 95.1 1e-14 seq60 82.4 6e-11 >seq101 Length=737149 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| || | |||| | || ||| Sbjct 590198 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCG 590139 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| |||||||| || | ||||| ||||| | Sbjct 590138 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGG 590079 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | || || | | || || || ||||| || | ||| Sbjct 590078 ATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTCTTG 590019 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || || || || || |||||| Sbjct 590018 CCAGTCAGGGTCTTGACGAAAATCTGCATA 589989 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || ||||||||| | |||| | || |||||||| || || ||| || Sbjct 590408 TCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAA 590349 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || || ||||| || ||||| || | ||||| ||||| ||||| |||| | | Sbjct 590348 ATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTA 590289 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | || || | || ||| ||||| | || || | || ||||||||||| ||||| Sbjct 590288 TCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTCTTTCCCGTCAGAGTCTTCACG 590229 Query 27237 AAGATTTGCATA 27248 ||||| |||||| Sbjct 590228 AAGATCTGCATA 590217 >seq60 Length=1285956 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 || || || ||||| || || || | ||| |||||| ||| |||| |||||| | Sbjct 692812 TGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATGTTGGAGGTGTACGGCTCAAAGCAC 692871 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 ||||||||||| | || || | ||| | || ||||||||| |||| | ||| Sbjct 692872 TCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTG 692931 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 || |||| |||||| | |||| | ||||| |||||| ||||| || ||| Sbjct 692932 TTGCGAACACCGTGAAGCTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGGTG 692991 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGA 130993 || |||||| |||||||| ||||| || || || || | | | ||||| Sbjct 692992 GGCTTGACA---TTCCACATGTCAAACTGCAGGATACCCTGAGAGACGGGA 693039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933711207896