Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq60 264 1e-65 >seq60 Length=1285956 Score = 264 bits (292), Expect = 1e-65 Identities = 950/1467 (65%), Gaps = 43/1467 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | ||||| || |||||||| || || || || | || || | ||| Sbjct 692840 GGTAGATGTTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTAC 692899 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || |||| || |||||||| |||| ||| | |||||| | | Sbjct 692900 TGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCT 692959 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||| || ||||||||| || | | | || || || |||| ||||||||||||| Sbjct 692960 CCTTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCC-ACATGTCAAACTGC 693018 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || || || ||||||| |||||| |||| |||| || | | | || Sbjct 693019 AGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCG 693078 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | || | ||| ||| | ||||| || ||||| || ||||| | |||| | Sbjct 693079 ATCTCCACGGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGC 693138 Query 111005 TCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGA 111059 ||| || || | || ||||| |||| || | | ||| |||| || | Sbjct 693139 TCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAG-----CATCAGCCA 693193 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA- 111118 |||| |||||||| | ||| || || | ||| ||||| || || | ||| || ||| Sbjct 693194 GACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTG--CTGTTGCG-AGCCTCGG 693250 Query 111119 --ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 ||||| || || ||||||| ||||| || || | ||| | | | |||| Sbjct 693251 GCACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGA 693310 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236 || || || || ||| | ||| | || | | | | ||||| || || | Sbjct 693311 CCTCGTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACATAGGCGGGCAGAG 693370 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 ||| || |||| ||||| |||||| |||||| | | |||||| | || || | Sbjct 693371 CGAGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCAG 693430 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | || | |||||| || ||| || |||| ||||| ||||| ||||| ||| || Sbjct 693431 TGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGT 693490 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 |||||||| |||||| |||| | || ||||| ||||| | | ||| || || | || Sbjct 693491 GGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACC 693550 Query 111417 AAA-CATCGGCGGCTGGTACAATGGCGTTGG---CCCGTCCCTCCGCCTCGTACTTTGTG 111472 | | | || | | || | |||| ||| | || ||||| ||||||||||| | Sbjct 693551 ACAGCTTCTGAGCCTTG----ATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCG 693606 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 || ||||| || |||||||| || ||||| ||||| || || || || || Sbjct 693607 TACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCAC 693666 Query 111533 AAAAGAGACCATT-GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 | |||| ||| | | | |||| || || ||||||||||| || || || |||||||| Sbjct 693667 ATCAGAGTCCACTCGGCGTTCTTC-TCGACACGCTTCATGAAGAGATCAGGGATCCACAG 693725 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 | || | |||||| || |||| || | || ||||| || | || | Sbjct 693726 AGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGATCCAT 693785 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTC 111707 |||||| | | ||| |||||||| ||||| ||||||| || | | || | | Sbjct 693786 GAACTCGAACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTT 693845 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | | ||| | || | ||||||||||| ||| ||| || || |||||||| || || | Sbjct 693846 GTTG-CCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGA 693904 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 111827 |||||| || ||||| || || |||| ||| | | || | | | |||| Sbjct 693905 TACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGGTGGA 693964 Query 111828 TGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 111887 | | ||||| || |||||| ||| ||||| || || | | || || ||| Sbjct 693965 CATTGAGACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCAT 694024 Query 111888 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 111947 ||||||| | || ||| ||||| | | | |||||||| || | ||| || | Sbjct 694025 AGATACCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCTG-GGCC 694083 Query 111948 T-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACA 112004 | || |||||||| ||||||||||| || | || || ||| | | |||| ||||| Sbjct 694084 TGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACA 694141 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 || || ||| ||||| | ||| || | || || || |||||| | || || | Sbjct 694142 TCAAGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCCCAGATGCCAACAGCAACAC 694201 Query 112065 GCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGCT 112122 |||||| ||||| ||| ||| || | | |||| || ||| |||| || || Sbjct 694202 GCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGC--TTGAGCAGGTAAGA 694259 Query 112123 CTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | ||| ||||| |||| |||||||| Sbjct 694260 CCGCTCCAGGGTCTTGAAGCCAAAGTA 694286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030955896800