Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq60 233 2e-56 seq58 96.9 4e-15 >seq60 Length=1285956 Score = 233 bits (258), Expect = 2e-56 Identities = 941/1465 (64%), Gaps = 43/1465 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| |||| ||||| |||||||||||||| ||||| || | || || | || | Sbjct 692842 TAGATGTTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTG 692901 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || || ||||| || | ||| | | | || | ||| Sbjct 692902 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCC 692961 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 || || |||||||| || | | | || | | |||||| |||||||| ||| Sbjct 692962 TTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGG 693021 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 ||||| || || | || || |||||| | || || | ||||| ||| || | Sbjct 693022 ATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATC 693081 Query 118422 TC---GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATT 118478 || |||| || | || || ||||| || || || || || || | |||| Sbjct 693082 TCCACGGAGGCCGAC---AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGC 693138 Query 118479 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537 || |||||| |||| ||||| | | || || | | || |||| || ||||| Sbjct 693139 TCCCGAGCCTCGGCGGACTCAAAGGGCATGCG-CAGAGCGAGGAAAGCATCAGCCAGACC 693197 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CAC 118594 || ||||| | || || ||||| || | ||| || || ||||| ||| ||| Sbjct 693198 CTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC---CTCGGGCAC 693254 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 ||| || || ||| || | | || || || | || ||| | |||| || Sbjct 693255 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 693314 Query 118655 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 || ||||| || | ||| | || | | | | ||||| || || |||| Sbjct 693315 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACATAGGCGGGCAGAGCGAG 693374 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 || ||||| || ||||||| |||||| | | |||||| || || || ||||| Sbjct 693375 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCA 693434 Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834 || ||| || || |||||| |||| |||||| || || ||| |||||| || Sbjct 693435 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTC 693494 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA- 118893 |||||| |||||| | || | || ||||| || || | || ||| || || | ||| | Sbjct 693495 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAG 693554 Query 118894 CATCGGCAGCTGGCACAGTGGCGTTGG---CTCGCCCCTCTTCCTCGTACTTTGTGTAGA 118950 | || | || | ||| ||| | || ||||| |||||||||| ||| | Sbjct 693555 CTTCTGAGCCTTGA----TGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACA 693610 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 |||| || ||||| || || | || | || || || || | ||||| | | Sbjct 693611 GGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCA 693670 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 ||| ||| | | || ||| || |||||||||||||| || |||||||| || ||| Sbjct 693671 GAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGAGCCA 693730 Query 119071 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 119130 ||| | ||| | ||| | || || | || || || |||| |||| || | Sbjct 693731 GGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGATCCATGAACT 693790 Query 119131 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGAC 119184 | | | ||| ||||||||||| || || || | || | | || ||| | Sbjct 693791 CGAACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTT--GTT 693848 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 | ||| |||||| ||||| | ||| ||| ||| || || |||||||| || ||||||| Sbjct 693849 G-CCACCCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATAC 693907 Query 119245 CATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGT 119304 ||| ||| |||||| || || |||| ||| | | || | || | ||||| | Sbjct 693908 CATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGGTGGACAT 693967 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 | |||||| || || ||| ||| ||||| ||||| | |||| || | |||| Sbjct 693968 TGAGACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGA 694027 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG- 119423 | || || || |||| |||| | | | |||||||| ||| | || |||||| Sbjct 694028 TACCCTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCTG-GGCCTGC 694086 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCT 119481 || ||||||||||||||||| || || | || ||| ||| | | |||| ||||||| Sbjct 694087 GGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACATCA 694144 Query 119482 TGTCGTAGGTCTCCAAGACG-GCGGGA--ATGTCTTCCCCGTGAATACCGATCGAGACCC 119538 || ||||||||| | |||| || || ||||| ||| | || || | | || | Sbjct 694145 AGTTGTAGGTCTCAATGACGCGCTCGACGTTGTCTCCCCAG---ATGCCAACAGCAACAC 694201 Query 119539 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCT 119598 |||| | ||||| ||||| || | | | || || ||| | | |||||| | Sbjct 694202 GCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAGGTAAGACC 694261 Query 119599 TCTCCAAGGTCTTGAGACCAAAATA 119623 ||||| |||||||| ||||| || Sbjct 694262 GCTCCAGGGTCTTGAAGCCAAAGTA 694286 >seq58 Length=769140 Score = 96.9 bits (106), Expect = 4e-15 Identities = 289/441 (66%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| ||||||||||||||||| ||||| ||| ||| ||| |||||||| Sbjct 628485 TAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTCCATG 628426 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || ||||| ||||| | | || | | | || | | | | || || || Sbjct 628425 AAGTCAAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGAGCGACC-AGCAGGCG 628367 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| |||| || |||||| || | ||| || Sbjct 628366 GTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGGGCGCA 628307 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || ||||||| ||| ||| ||| |||| || || | ||| || Sbjct 628306 GGGCAGAGCCTCGGTGATGAACTCCTGCTCGATGGCCACGGCATCGGTGATGATTCTCTG 628247 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCCT 130025 ||| ||| ||| || | | || | || |||||| ||| || || Sbjct 628246 GATGACGTCCTTGCTGGGGCGGT-GCTTGAGGTGGGAGAAGAGCAGGCAGGCGAAGTCGG 628188 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||| |||||||||||||| ||||| || || || |||||| ||| || ||||| | | Sbjct 628187 TGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGC 628128 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 | |||||||| | |||||| |||| | || | || ||||||||| ||||| || Sbjct 628127 CGCGCTTCTTGACCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGG 628068 Query 130146 ACGCGAACGCAAAGAGACGCT 130166 || || |||| || |||| Sbjct 628067 CGGCAAAGGCAACCAGGCGCT 628047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434171851480