Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq60 286 4e-72 seq58 91.5 2e-13 >seq60 Length=1285956 Score = 286 bits (316), Expect = 4e-72 Identities = 914/1396 (65%), Gaps = 35/1396 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTC 104277 ||| ||| ||||| ||||||| || || | || || |||||| |||| | || Sbjct 694221 CCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATC--TGGGGA-GACAACGTCGAGCG 694165 Query 104278 TGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACC 104335 ||| | ||||| ||| || ||||||| |||| | | ||| || || | || ||| Sbjct 694164 CGTCATTGAGACCTACAACTTGATGTCCAGCAAGTTCT--TCACCCATGCCTCCCCCACC 694107 Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395 |||||||| |||||||| || |||| | || |||||||| | | | ||| Sbjct 694106 CTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTTGATATAAAG 694047 Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || ||| || | |||||||||| || || | | || || ||||| ||| | Sbjct 694046 GATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGATG 693987 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 ||||| || ||||| | | |||| | | | || | | ||| |||| || Sbjct 693986 GCTGGCGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACTGGTTCTTATATTGCCGGA 693927 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || ||||| || ||||||| || || |||||||| || || ||| ||| |||||| Sbjct 693926 ACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGAGTGTTCAACAACACCGCGCGC 693867 Query 104576 TATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATG 104631 ||||| | || | ||| | | | | || | | || ||||||| ||||| || Sbjct 693866 TATGTTGACCAGGGTGG-CAACAAGCGCCCCGGCGCCTTTGCCATCTATCTCGAGCCGTG 693808 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| ||| | | |||||| | || |||| ||||| || | ||||||| || Sbjct 693807 GCACGCCGATGTGTTCGAGTTCATGGATCTGCGCAAGAACCATGGAAAGGAGGAGGTCCG 693748 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 | | ||| | ||| ||||| ||||| || ||||||||||||||| | || ||| | Sbjct 693747 CGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAA 693688 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || | | | ||| |||| | || || || || || ||||| |||| | || Sbjct 693687 GAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGG 693628 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869 |||||||| || ||||| ||| |||||||||| || |||| ||| || ||| Sbjct 693627 CGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTC--GCGGTCGCAAGACC 693570 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | || | || | ||||| | || || ||| || |||| |||||||| || | || Sbjct 693569 AT-CAAGGCTCAGAAGCTGTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCC 693511 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||| ||||| ||| |||||||| ||||| || || ||||| ||||| || Sbjct 693510 CTTCATGCTGTACAAGGACCACTGTAACCGCAAGAGCAACCAGAAGAACCTGGGTACCAT 693451 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 || ||||| || || || || ||| | || | | |||||| |||||| Sbjct 693450 TCGCAGCTCCAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTGT 693391 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATTT 105106 ||| ||||| || || ||||||| ||| ||||| || | | | |||| | | | | Sbjct 693390 GTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTATGTTGA-CTACA-ACAAGGGCGTGTAT 693333 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 || | ||| || || ||||| || || | || | ||||| ||| | | ||| Sbjct 693332 GACTTTGAGAAGCTGCACGAGGTCACCATGGTGGTTGTCCGCAACCTGAACCGCATCATT 693273 Query 105167 GATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 ||| || |||||||| ||| ||||| || || ||| | ||||| || Sbjct 693272 GATGTCAACCACTACCCCGTGCCCGAG---GCTCGCAACAGCAACATGCGCCACCGCCCC 693216 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGA 105282 || ||| | |||||||||||||| || |||| ||| | || || ||| | ||||| Sbjct 693215 ATCGGTGTTGGTGTTCAGGGTCTGGCTGATGCTTTCCTCGCTCTG-CGCATGCCCTTTGA 693157 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 |||| ||| || ||| | || || || || |||||||| || ||||| ||||| Sbjct 693156 GTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGACCATCTACCACGCTGCTCT 693097 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 ||| ||| | || ||| || || | || |||| |||||| ||||| Sbjct 693096 GTCGGCCTCCGTGGAGATCGCCAAGGAGGAGGGAACCTACTCCACCTATGAGGGCTCTCC 693037 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 105462 | || || || | || || ||||| |||||| | | || ||| | || || Sbjct 693036 CGTCTCTCAGGGTATCCTGCAGTTTGACATGTGGAATGTCAAGCCCACCGACCTCTGGGA 692977 Query 105463 CTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 |||||| ||| || ||||| | |||||| | ||| |||| |||||||| || ||| Sbjct 692976 CTGGGATAGC-CTGAAGGAGCAGATCAAGCTTCACGGTGTTCGCAACAGTCTGCTGCTGG 692918 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || ||| ||| | || || | || || || || |||||||| || | Sbjct 692917 CTCCCATGCCCACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGCTTTGAGCCGT 692858 Query 105582 ACACGACGAACATCTA 105597 |||| | |||||||| Sbjct 692857 ACACCTCCAACATCTA 692842 >seq58 Length=769140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94805 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 94864 |||| || | || ||||| || ||||| ||||||||| ||| |||||| | | Sbjct 628047 AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGA 628106 Query 94865 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 94924 | | ||| |||||||||| || | ||||| || || ||||||||||||||| |||| Sbjct 628107 TCTTCTGGGTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCT 628166 Query 94925 CTCGTGACGAGGGACTCCAC 94944 | ||||||||||| || ||| Sbjct 628167 CGCGTGACGAGGGTCTGCAC 628186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259830328920