Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq52 167 7e-36
seq101 147 7e-30
seq65 98.7 3e-15
seq94 91.5 4e-13
seq79 89.7 2e-12
>seq52
Length=911667
Score = 167 bits (184), Expect = 7e-36
Identities = 350/519 (67%), Gaps = 2/519 (0%)
Strand=Plus/Minus
Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657
|| || ||| | || || | || || || || || || || || | |||||| ||
Sbjct 806393 ACCGTCACTAACGCCGTCGTGACCGTGCCCGCTTACTTCAACGACTCTCAGCGTCAGGCC 806334
Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717
|| || |||||||| |||||| || | || ||||| | || || || || || ||
Sbjct 806333 ACCAAGGATGCTGGTCTCATTGCCGGCCTGAACGTTCTCCGTATCATCAACGAGCCTACC 806274
Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATT 349777
||||| || ||||| ||||| || ||||| | | || || || |||| ||
Sbjct 806273 GCTGCCGCCATTGCCTATGGCCTCGATAAGAAGGTCGAGGGCGAGCGCAACGTTCTCATC 806214
Query 349778 TTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTT 349837
|| ||| | || ||||||||||| |||||||| || || || |||| || || || ||
Sbjct 806213 TTCGATCTTGGCGGTGGTACTTTCGATGTATCGCTCCTTACCATTGAGGACGGTATCTTC 806154
Query 349838 GAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTC 349897
|| || || | || |||||||| || ||||| ||||| || ||||| ||| | |||||
Sbjct 806153 GAGGTCAAGTCGACCGCTGGTGACACCCATCTGGGTGGTGAGGATTTCGATCACCGTCTG 806094
Query 349898 GTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCC 349956
|| ||| || || || || || ||||| ||||| || | ||| | || |
Sbjct 806093 GTCCAGCACTTCGTGAACGAGTTCAAGCG-CAAGCACAAGAAGGATCTGTCCTCGAACGC 806035
Query 349957 TAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTAC 350016
| | || | || || || | ||||| || || ||||| |||||| || | || || |
Sbjct 806034 TCGTGCTCTCCGCCGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGTACCCTTTCGTCGTC 805975
Query 350017 TACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTAT 350076
| | || ||||| || || |||||||| || ||| || | || |||| | || ||
Sbjct 805974 TGCTCAGACCTCGATCGAGATTGATTCGCTGTATGAGGGTATTGACTTCTACACTTCGAT 805915
Query 350077 TACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTT 350115
||| || ||||| || ||||| | || |||||| ||
Sbjct 805914 TACTCGCGCTCGTTTCGAAGAGCTCTGCCAGGATCTCTT 805876
>seq101
Length=737149
Score = 147 bits (162), Expect = 7e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || || || |||||||| || || || || ||
Sbjct 589992 CATACCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 589933
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || ||||| ||||| || || |||||||||||||| || |||||||| ||
Sbjct 589932 AGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGG 589873
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || |||||||| || || | || || ||||| || | ||| || | ||
Sbjct 589872 AGGAATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTC 589813
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| ||||| || || || || || ||||||||
Sbjct 589812 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762
Score = 123 bits (136), Expect = 8e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||||| | || || | || || || ||||| || || || || || ||
Sbjct 590220 CATACCACCACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 590161
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || || || |||||||| ||||| ||||| |||||||| ||
Sbjct 590160 CGACAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGG 590101
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || |||||||| || || | || || || || || | ||| || | ||
Sbjct 590100 GGGGATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTC 590041
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| || || || || || || |||||||||||
Sbjct 590040 GACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || || || ||||| ||| || || || || || || || | || || |||||
Sbjct 590429 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 590370
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || ||||| || || || || ||||| || || || || || || ||||||
Sbjct 590369 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 590310
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
||||| || | || || |||||||| | ||| || | ||| ||||| | |||| |||
Sbjct 590309 TGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTC 590250
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || || || || ||||||||
Sbjct 590249 TTTCCCGTCAGAGTCTTCACGAAGATCTGCAT 590218
Score = 98.7 bits (108), Expect = 3e-15
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||| || || | | || || |||||||| || ||||| || |||||||| || ||
Sbjct 589764 CATACCGCCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTC 589705
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || ||||| ||||| || || || || || ||
Sbjct 589704 GGAGAGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGG 589645
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || || || | ||| || | ||
Sbjct 589644 GGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTC 589585
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || || | |||||||||||
Sbjct 589584 CACCTCGAGGGTGATAGTCTTTCCGGT 589558
>seq65
Length=54341
Score = 98.7 bits (108), Expect = 3e-15
Identities = 100/128 (78%), Gaps = 8/128 (6%)
Strand=Plus/Minus
Query 266994 CGCCACGGACAAAAAGGTACCATTGGT---ACGATTATTCCTG-AAGAAAATATGCCATT 267049
||||||||||| |||||||| |||||| ||| | || | ||||| | ||||||||
Sbjct 7239 CGCCACGGACAGAAAGGTACGATTGGTGTCACG----TACCGGCAAGAAGACATGCCATT 7184
Query 267050 TAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCTATTCCTAGTCGTAT 267109
| | ||| ||||||| |||||||| |||||||||||||| || ||||| ||||||
Sbjct 7183 CACTCGAGAGGGAATTACGCCTGATATCATTATTAATCCTCACGCCATTCCCTCTCGTAT 7124
Query 267110 GACAATTG 267117
||| ||||
Sbjct 7123 GACCATTG 7116
>seq94
Length=69539
Score = 91.5 bits (100), Expect = 4e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || || || | || || ||||| ||||| || || |||||||| ||
Sbjct 45452 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATC 45511
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || || || || || || || || || || ||||| || || | || ||||| ||
Sbjct 45512 AGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 45571
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | ||| || | || || ||||| || | ||||| || || || || || || |||
Sbjct 45572 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 45631
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 45632 ATCTGCAT 45639
>seq79
Length=2610973
Score = 89.7 bits (98), Expect = 2e-12
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || ||||| | || || ||||| ||||| || || |||||||| ||
Sbjct 579496 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 579437
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
||||| || || || || ||||| || || || ||||| || || | || || || ||
Sbjct 579436 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 579377
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
|| | || || | || || ||||| || | ||||||||||| || || || || ||
Sbjct 579376 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515251817911799
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |