Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq52 167 7e-36 seq101 147 7e-30 seq65 98.7 3e-15 seq94 91.5 4e-13 seq79 89.7 2e-12 >seq52 Length=911667 Score = 167 bits (184), Expect = 7e-36 Identities = 350/519 (67%), Gaps = 2/519 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| | || || | || || || || || || || || | |||||| || Sbjct 806393 ACCGTCACTAACGCCGTCGTGACCGTGCCCGCTTACTTCAACGACTCTCAGCGTCAGGCC 806334 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 || || |||||||| |||||| || | || ||||| | || || || || || || Sbjct 806333 ACCAAGGATGCTGGTCTCATTGCCGGCCTGAACGTTCTCCGTATCATCAACGAGCCTACC 806274 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATT 349777 ||||| || ||||| ||||| || ||||| | | || || || |||| || Sbjct 806273 GCTGCCGCCATTGCCTATGGCCTCGATAAGAAGGTCGAGGGCGAGCGCAACGTTCTCATC 806214 Query 349778 TTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTT 349837 || ||| | || ||||||||||| |||||||| || || || |||| || || || || Sbjct 806213 TTCGATCTTGGCGGTGGTACTTTCGATGTATCGCTCCTTACCATTGAGGACGGTATCTTC 806154 Query 349838 GAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTC 349897 || || || | || |||||||| || ||||| ||||| || ||||| ||| | ||||| Sbjct 806153 GAGGTCAAGTCGACCGCTGGTGACACCCATCTGGGTGGTGAGGATTTCGATCACCGTCTG 806094 Query 349898 GTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCC 349956 || ||| || || || || || ||||| ||||| || | ||| | || | Sbjct 806093 GTCCAGCACTTCGTGAACGAGTTCAAGCG-CAAGCACAAGAAGGATCTGTCCTCGAACGC 806035 Query 349957 TAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTAC 350016 | | || | || || || | ||||| || || ||||| |||||| || | || || | Sbjct 806034 TCGTGCTCTCCGCCGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGTACCCTTTCGTCGTC 805975 Query 350017 TACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTAT 350076 | | || ||||| || || |||||||| || ||| || | || |||| | || || Sbjct 805974 TGCTCAGACCTCGATCGAGATTGATTCGCTGTATGAGGGTATTGACTTCTACACTTCGAT 805915 Query 350077 TACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTT 350115 ||| || ||||| || ||||| | || |||||| || Sbjct 805914 TACTCGCGCTCGTTTCGAAGAGCTCTGCCAGGATCTCTT 805876 >seq101 Length=737149 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || |||||||| || || || || || Sbjct 589992 CATACCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 589933 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| ||||| || || |||||||||||||| || |||||||| || Sbjct 589932 AGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGG 589873 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || |||||||| || || | || || ||||| || | ||| || | || Sbjct 589872 AGGAATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTC 589813 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 589812 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762 Score = 123 bits (136), Expect = 8e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||||| | || || | || || || ||||| || || || || || || Sbjct 590220 CATACCACCACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 590161 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || |||||||| ||||| ||||| |||||||| || Sbjct 590160 CGACAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGG 590101 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || |||||||| || || | || || || || || | ||| || | || Sbjct 590100 GGGGATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTC 590041 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || ||||||||||| Sbjct 590040 GACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| ||| || || || || || || || | || || ||||| Sbjct 590429 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 590370 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| || || || || ||||| || || || || || || |||||| Sbjct 590369 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 590310 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || | || || |||||||| | ||| || | ||| ||||| | |||| ||| Sbjct 590309 TGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTC 590250 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || || || || |||||||| Sbjct 590249 TTTCCCGTCAGAGTCTTCACGAAGATCTGCAT 590218 Score = 98.7 bits (108), Expect = 3e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | || || |||||||| || ||||| || |||||||| || || Sbjct 589764 CATACCGCCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTC 589705 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| || || || || || || Sbjct 589704 GGAGAGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGG 589645 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | ||| || | || Sbjct 589644 GGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTC 589585 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || | ||||||||||| Sbjct 589584 CACCTCGAGGGTGATAGTCTTTCCGGT 589558 >seq65 Length=54341 Score = 98.7 bits (108), Expect = 3e-15 Identities = 100/128 (78%), Gaps = 8/128 (6%) Strand=Plus/Minus Query 266994 CGCCACGGACAAAAAGGTACCATTGGT---ACGATTATTCCTG-AAGAAAATATGCCATT 267049 ||||||||||| |||||||| |||||| ||| | || | ||||| | |||||||| Sbjct 7239 CGCCACGGACAGAAAGGTACGATTGGTGTCACG----TACCGGCAAGAAGACATGCCATT 7184 Query 267050 TAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCTATTCCTAGTCGTAT 267109 | | ||| ||||||| |||||||| |||||||||||||| || ||||| |||||| Sbjct 7183 CACTCGAGAGGGAATTACGCCTGATATCATTATTAATCCTCACGCCATTCCCTCTCGTAT 7124 Query 267110 GACAATTG 267117 ||| |||| Sbjct 7123 GACCATTG 7116 >seq94 Length=69539 Score = 91.5 bits (100), Expect = 4e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| ||||| || || |||||||| || Sbjct 45452 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATC 45511 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || || || || || || || || || || ||||| || || | || ||||| || Sbjct 45512 AGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 45571 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | ||| || | || || ||||| || | ||||| || || || || || || ||| Sbjct 45572 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 45631 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 45632 ATCTGCAT 45639 >seq79 Length=2610973 Score = 89.7 bits (98), Expect = 2e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || ||||| | || || ||||| ||||| || || |||||||| || Sbjct 579496 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 579437 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| || || || || ||||| || || || ||||| || || | || || || || Sbjct 579436 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 579377 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || | || || | || || ||||| || | ||||||||||| || || || || || Sbjct 579376 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251817911799