Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq60 260 2e-64 seq56 138 1e-27 >seq60 Length=1285956 Score = 260 bits (288), Expect = 2e-64 Identities = 513/750 (68%), Gaps = 8/750 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | || ||| || ||| || | ||| ||| |||||| ||| Sbjct 694207 TCATGCGTGTTGCTGTTGGCATCTGGGGAGACAACGTCGAGCGCGTCATTGAGACCTACA 694148 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | |||| ||| || || ||| | || ||||| |||||||||||||| Sbjct 694147 ACTTGATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACCCTCTTCAACGCTGGTACCC 694088 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | ||| | ||| ||||||||||| | || ||||||||| || || || | Sbjct 694087 CGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTTGATATAAAGGATGACAGCATTGAGGGTA 694028 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 |||| || || |||||| || ||| ||||||||| | | || || || ||| || Sbjct 694027 TCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGCGGCATTGGTCTCA 693968 Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | || || | ||| |||||| | || | || || || || ||| || | Sbjct 693967 A-TG-TCCACCGTATCCGTGCTACTGGTTCTTATATTGCCGGAACCAATGGCACGTCCAA 693910 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| ||| | || ||||| || || ||||||||||| || || || || |||||||||| Sbjct 693909 TGGTATCATCCCCATGCTTCGAGTGTTCAACAACACCGCGCGCTATGTTGACCAGGGTGG 693850 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 |||||| || | || |||||||| |||||||||||||||||||| | | || Sbjct 693849 CAACAAGCGCCCCGGCGCCTTTGCCATCTATCTCGAGCCGTGGCACGCCGATGTGTTCGA 693790 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| | || ||||| ||| || || | || ||| | ||| | | || |||| Sbjct 693789 GTTCATGGATCTGCGCAAGAACCATGGAAAGGAGGAGGTCCGCGCCAGAGATTTGTTCCT 693730 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||||||||| || || ||||||||| | || |||||| ||| |||||| || Sbjct 693729 GGCTCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGCCGAGTGGACTCT 693670 Query 53731 GATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 ||||||||| |||||||||||||| | | | | || |||||| |||||||| | | Sbjct 693669 GATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTG-CTACGGCGAGGAGTTCGAGGCCC 693611 Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 |||| || ||||| | | |||| ||| |||| ||||||| | || | | Sbjct 693610 TGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGCAAGACCATCAAGGCTCAGAAGCTGT 693551 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA-T 53908 || |||| |||||| || ||| ||||| || | || | |||| |||||||| Sbjct 693550 GGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGACC 693491 Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | || ||| |||||||||||||||||| Sbjct 693490 ACTGT-AACCGCAAGAGCAACCAGAAGAAC 693462 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | ||| |||||| ||||| ||| | ||| | | | | | ||| | Sbjct 692689 TCAAGGCTCTGTACAAGACGGTCTGGGAAATTTCCCAGCGCACTGTTGTGCAGATGGCAG 692630 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || |||||||| | ||| |||||||| ||||||||||||||| |||| || | || Sbjct 692629 CCGACCGTGGTGCTTTCATTGACCAGTCGCAGTCTCTGAACATCCACATGAAGGACCCCA 692570 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | | |||||||| ||| |||||| || |||||||| || | Sbjct 692569 CGATGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTTGGTCTCAAGACCGGCA 692510 Query 55908 TGTACTATCTGCGGACCC 55925 ||||||| || || |||| Sbjct 692509 TGTACTACCTCCGTACCC 692492 >seq56 Length=737661 Score = 138 bits (152), Expect = 1e-27 Identities = 199/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350 |||||| || | ||| |||||||||||| ||| |||||||| ||| |||||||||| Sbjct 90704 ACGGTGACAGTCTCGTGTAAATGTAACGAGGGCTGGCAGCATCGCCGCCTCCAGCAAGAC 90645 Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410 ||| |||||| | |||||| ||||||| | ||| | |||||||| || ||||| ||| Sbjct 90644 GCGAACCGAAATTTCCACTGGGCTCCAGGTAGTTGACGTTGTTGGATCCAACAAACGTTT 90585 Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470 | || | | ||||| || | | | ||||| || || || |||||||| Sbjct 90584 GCGCAAGACCAATGATCGTCTGCTGCATGGATGTATCACCGTGCTGGTAAGCCGTCTGTC 90525 Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGC 117530 | | | ||| || |||| || | |||||| ||| |||| || ||||| || Sbjct 90524 CAGAAATGTAACCGGCCAACTCAATAACCTTCTCGTCGTGGGTCACATTGCGCTTGAAGC 90465 Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || || |||||||||||||||| ||||||| |||||| Sbjct 90464 ACGCGTAGATCACCTTGCGCTGACCAGGCTTCAAGCCATCC 90424 Score = 114 bits (126), Expect = 1e-20 Identities = 280/422 (66%), Gaps = 2/422 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 |||||||| || || || |||||||||| || ||||||||||| | ||||| || | Sbjct 90843 CCGGTACCAATACCGTCGGCACCGTTGATGAGCATCATCGGCACCACGGGGGCATACGTC 90784 Query 151936 TCCGGCTCCACCTG-TTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGG 151994 | ||||| | ||| ||| | || || | | || | || ||| | | || ||| Sbjct 90783 TTGGGCTCAATCTGCTTGTTC-TCCTCGAACTGGTGCTCCAGAACAGGCTCATCGTGCGG 90725 Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 | ||| | || || | | || || | |||| | ||||| || | |||||| || Sbjct 90724 GTGGAAAACACGGCGCGCAAACGGTGACAGTCTCGTGTAAATGTAACGAGGGCTGGCAGC 90665 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||| ||| || || || |||| || || | |||| |||||| ||| ||||| ||| Sbjct 90664 ATCGCCGCCTCCAGCAAGACGCGAACCGAAATTTCCACTGGGCTCCAGGTAGTTGACGTT 90605 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||||| || || || | || || | | | ||||| ||||| | ||||| Sbjct 90604 GTTGGATCCAACAAACGTTTGCGCAAGACCAATGATCGTCTGCTGCATGGATGTATCACC 90545 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 ||| || || |||||||| | | ||||| || ||||||| |||||| ||| Sbjct 90544 GTGCTGGTAAGCCGTCTGTCCAGAAATGTAACCGGCCAACTCAATAACCTTCTCGTCGTG 90485 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 |||| || ||||| || ||||| |||||||||||||| || ||||| || || Sbjct 90484 GGTCACATTGCGCTTGAAGCACGCGTAGATCACCTTGCGCTGACCAGGCTTCAAGCCATC 90425 Query 152295 CA 152296 || Sbjct 90424 CA 90423 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/136 (75%), Gaps = 6/136 (4%) Strand=Plus/Minus Query 119066 AATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCAC---CGGTC 119122 |||| || ||||| || ||| ||||| |||||||||||||| ||||||| ||||| Sbjct 88806 AATTCCGTGCTGAAAACATTGCACAGCTTCGCACCGTATCCGTTACGACCACCAACGGTC 88747 Query 119123 ACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCG 119182 || ||| ||||||| ||||||||| | ||||| ||||| || || ||||| ||| Sbjct 88746 ---TTCTTCTCGTCGTCGTCGTAGTTGGAACCCGTCAACAGGTGACCGAAAATGAGTTCG 88690 Query 119183 GGGATCCAAATGGGCT 119198 || || | ||| ||| Sbjct 88689 GGAATGTACATGCGCT 88674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215090253400