Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq60 260 2e-64
seq56 138 1e-27
>seq60
Length=1285956
Score = 260 bits (288), Expect = 2e-64
Identities = 513/750 (68%), Gaps = 8/750 (1%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || || | || ||| || ||| || | ||| ||| |||||| |||
Sbjct 694207 TCATGCGTGTTGCTGTTGGCATCTGGGGAGACAACGTCGAGCGCGTCATTGAGACCTACA 694148
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|||| ||| | |||| ||| || || ||| | || ||||| ||||||||||||||
Sbjct 694147 ACTTGATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACCCTCTTCAACGCTGGTACCC 694088
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| | ||| | ||| ||||||||||| | || ||||||||| || || || |
Sbjct 694087 CGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTTGATATAAAGGATGACAGCATTGAGGGTA 694028
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
|||| || || |||||| || ||| ||||||||| | | || || || ||| ||
Sbjct 694027 TCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGCGGCATTGGTCTCA 693968
Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
| || || | ||| |||||| | || | || || || || ||| || |
Sbjct 693967 A-TG-TCCACCGTATCCGTGCTACTGGTTCTTATATTGCCGGAACCAATGGCACGTCCAA 693910
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
||| ||| | || ||||| || || ||||||||||| || || || || ||||||||||
Sbjct 693909 TGGTATCATCCCCATGCTTCGAGTGTTCAACAACACCGCGCGCTATGTTGACCAGGGTGG 693850
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
|||||| || | || |||||||| |||||||||||||||||||| | | ||
Sbjct 693849 CAACAAGCGCCCCGGCGCCTTTGCCATCTATCTCGAGCCGTGGCACGCCGATGTGTTCGA 693790
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| | || ||||| ||| || || | || ||| | ||| | | || ||||
Sbjct 693789 GTTCATGGATCTGCGCAAGAACCATGGAAAGGAGGAGGTCCGCGCCAGAGATTTGTTCCT 693730
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
||||||||||| || || ||||||||| | || |||||| ||| |||||| ||
Sbjct 693729 GGCTCTGTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGCCGAGTGGACTCT 693670
Query 53731 GATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
||||||||| |||||||||||||| | | | | || |||||| |||||||| | |
Sbjct 693669 GATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTG-CTACGGCGAGGAGTTCGAGGCCC 693611
Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849
|||| || ||||| | | |||| ||| |||| ||||||| | || | |
Sbjct 693610 TGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGCAAGACCATCAAGGCTCAGAAGCTGT 693551
Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA-T 53908
|| |||| |||||| || ||| ||||| || | || | |||| ||||||||
Sbjct 693550 GGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGACC 693491
Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
| || ||| ||||||||||||||||||
Sbjct 693490 ACTGT-AACCGCAAGAGCAACCAGAAGAAC 693462
Score = 96.9 bits (106), Expect = 4e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||||| | ||| |||||| ||||| ||| | ||| | | | | | ||| |
Sbjct 692689 TCAAGGCTCTGTACAAGACGGTCTGGGAAATTTCCCAGCGCACTGTTGTGCAGATGGCAG 692630
Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847
| || |||||||| | ||| |||||||| ||||||||||||||| |||| || | ||
Sbjct 692629 CCGACCGTGGTGCTTTCATTGACCAGTCGCAGTCTCTGAACATCCACATGAAGGACCCCA 692570
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
| ||| |||| | | | |||||||| ||| |||||| || |||||||| || |
Sbjct 692569 CGATGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTTGGTCTCAAGACCGGCA 692510
Query 55908 TGTACTATCTGCGGACCC 55925
||||||| || || ||||
Sbjct 692509 TGTACTACCTCCGTACCC 692492
>seq56
Length=737661
Score = 138 bits (152), Expect = 1e-27
Identities = 199/281 (71%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350
|||||| || | ||| |||||||||||| ||| |||||||| ||| ||||||||||
Sbjct 90704 ACGGTGACAGTCTCGTGTAAATGTAACGAGGGCTGGCAGCATCGCCGCCTCCAGCAAGAC 90645
Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410
||| |||||| | |||||| ||||||| | ||| | |||||||| || ||||| |||
Sbjct 90644 GCGAACCGAAATTTCCACTGGGCTCCAGGTAGTTGACGTTGTTGGATCCAACAAACGTTT 90585
Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470
| || | | ||||| || | | | ||||| || || || ||||||||
Sbjct 90584 GCGCAAGACCAATGATCGTCTGCTGCATGGATGTATCACCGTGCTGGTAAGCCGTCTGTC 90525
Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGC 117530
| | | ||| || |||| || | |||||| ||| |||| || ||||| ||
Sbjct 90524 CAGAAATGTAACCGGCCAACTCAATAACCTTCTCGTCGTGGGTCACATTGCGCTTGAAGC 90465
Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571
| || || |||||||||||||||| ||||||| ||||||
Sbjct 90464 ACGCGTAGATCACCTTGCGCTGACCAGGCTTCAAGCCATCC 90424
Score = 114 bits (126), Expect = 1e-20
Identities = 280/422 (66%), Gaps = 2/422 (0%)
Strand=Plus/Minus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|||||||| || || || |||||||||| || ||||||||||| | ||||| || |
Sbjct 90843 CCGGTACCAATACCGTCGGCACCGTTGATGAGCATCATCGGCACCACGGGGGCATACGTC 90784
Query 151936 TCCGGCTCCACCTG-TTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGG 151994
| ||||| | ||| ||| | || || | | || | || ||| | | || |||
Sbjct 90783 TTGGGCTCAATCTGCTTGTTC-TCCTCGAACTGGTGCTCCAGAACAGGCTCATCGTGCGG 90725
Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054
| ||| | || || | | || || | |||| | ||||| || | |||||| ||
Sbjct 90724 GTGGAAAACACGGCGCGCAAACGGTGACAGTCTCGTGTAAATGTAACGAGGGCTGGCAGC 90665
Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114
||| ||| || || || |||| || || | |||| |||||| ||| ||||| |||
Sbjct 90664 ATCGCCGCCTCCAGCAAGACGCGAACCGAAATTTCCACTGGGCTCCAGGTAGTTGACGTT 90605
Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174
||||| || || || | || || | | | ||||| ||||| | |||||
Sbjct 90604 GTTGGATCCAACAAACGTTTGCGCAAGACCAATGATCGTCTGCTGCATGGATGTATCACC 90545
Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234
||| || || |||||||| | | ||||| || ||||||| |||||| |||
Sbjct 90544 GTGCTGGTAAGCCGTCTGTCCAGAAATGTAACCGGCCAACTCAATAACCTTCTCGTCGTG 90485
Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294
|||| || ||||| || ||||| |||||||||||||| || ||||| || ||
Sbjct 90484 GGTCACATTGCGCTTGAAGCACGCGTAGATCACCTTGCGCTGACCAGGCTTCAAGCCATC 90425
Query 152295 CA 152296
||
Sbjct 90424 CA 90423
Score = 89.7 bits (98), Expect = 6e-13
Identities = 102/136 (75%), Gaps = 6/136 (4%)
Strand=Plus/Minus
Query 119066 AATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCAC---CGGTC 119122
|||| || ||||| || ||| ||||| |||||||||||||| ||||||| |||||
Sbjct 88806 AATTCCGTGCTGAAAACATTGCACAGCTTCGCACCGTATCCGTTACGACCACCAACGGTC 88747
Query 119123 ACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCG 119182
|| ||| ||||||| ||||||||| | ||||| ||||| || || ||||| |||
Sbjct 88746 ---TTCTTCTCGTCGTCGTCGTAGTTGGAACCCGTCAACAGGTGACCGAAAATGAGTTCG 88690
Query 119183 GGGATCCAAATGGGCT 119198
|| || | ||| |||
Sbjct 88689 GGAATGTACATGCGCT 88674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215090253400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |