Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq60 279 6e-70 seq101 158 1e-33 seq94 145 9e-30 seq79 140 4e-28 seq58 104 3e-17 >seq60 Length=1285956 Score = 279 bits (308), Expect = 6e-70 Identities = 1125/1751 (64%), Gaps = 51/1751 (3%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || |||||||||| | |||| Sbjct 692488 GCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGC 692547 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | ||||||| || |||| ||||||||||||||| ||||| Sbjct 692548 ATGCTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGAGACTGCGACTGG 692607 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||||| ||||| || || ||||| | | || | || | ||||||||| Sbjct 692608 TCAATGAAAGCACCACGGTCGGCTGCCATCTGCACAACAGTGCGCTGGGAAATTTCCCAG 692667 Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGT---CCAGATTTTGCACACTG 80265 || || |||| |||| || | || | || ||| | | || || | | Sbjct 692668 ACCGTCTTGTACAGAGCCTT--GATG-TCAGCAGGGATGCTGGCAATGTTCTGGATCGAG 692724 Query 80266 CCACCGTCCTTTACAATTTGATTTTTCAATTCAGAC-GTCCAGACACCAAGCTTGTGCAG 80324 || ||| | || | || |||| | || | | ||| | ||||| | | || Sbjct 692725 CCGTTGTCGGCAATGATGCGGTTCTTCA-TCGAGTCCGACCACAGGCCAAGGTCGACGAG 692783 Query 80325 ATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATA 80384 ||| | | | ||| | || |||||||| || || || ||| | || Sbjct 692784 ATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTA 692843 Query 80385 CAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGC 80444 | ||| | ||||| |||||||| ||||||||| || || ||||| | || || || Sbjct 692844 GATGTTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGC 692903 Query 80445 CGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCG 80504 || ||||| || | | || ||| || || | ||||| |||||| | ||| Sbjct 692904 AGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCCTT 692963 Query 80505 CAAATCTGACCAAAAATCAACCCCAA----CGCTG----TGACC--CCACATGTCGTGCT 80554 || || || || |||| || || |||| ||||||||| || Sbjct 692964 CAGG-CTATCC------CAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACT 693016 Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614 ||| ||| |||| || | ||||| ||| | | || ||| | |||||| ||||| Sbjct 693017 GCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGG 693076 Query 80615 CCAGCTCACACG-ACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673 | | ||| |||| | || || || ||||| || ||| ||| |||| || |||| Sbjct 693077 CGATCTC-CACGGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTC 693135 Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733 | | || |||| | | || || | || || || | ||| | |||||||| Sbjct 693136 AGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCAGCCAGA 693195 Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAAT 80792 |||||||| || | |||| |||||||||||| |||| | | || ||||| || | Sbjct 693196 CCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTT-GCTGTTGCGAGCCTCGGGCAC 693254 Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852 ||||| ||| ||| |||| ||||||||||||||| ||| ||| || || || Sbjct 693255 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 693314 Query 80853 ATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906 || || |||| |||||| | | ||| | ||| | || || || || Sbjct 693315 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACATAGGCGGGCAGAGCGAG 693374 Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| ||||| |||||||| |||||||| || | | | |||| | ||| || ||||| Sbjct 693375 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCA 693434 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 || || || ||| ||||||||||| |||||||| |||| ||| || ||| Sbjct 693435 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTC 693494 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 |||||| |||| | ||| | ||||||||| ||| | || ||||||||| | ||| | Sbjct 693495 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAG 693554 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146 || | ||||||| |||||| || || ||| | ||||| |||| | Sbjct 693555 CTTCTGAGCCTTGATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGC 693614 Query 81147 GTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 ||||||| | |||| | || || | || | ||||||||||| ||||||||||| Sbjct 693615 CTCGAACTCCTCGCCGTAGCAG-TCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAG 693673 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 ||| |||| || ||||| ||| ||||||||| ||||||||||| || || || Sbjct 693674 TCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGA 693733 Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325 ||| || | | ||| ||||||| | || ||||| ||||| || | || || | Sbjct 693734 ACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGATCCATGAACTCGA 693793 Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCAC 81382 | || || ||||| ||||| ||||| | ||| | | || ||| ||||| Sbjct 693794 ACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCAC 693853 Query 81383 CCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTG 81442 |||||| || || || || || ||| || || || | ||| ||||||||||||| | Sbjct 693854 CCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATACCATTGG 693913 Query 81443 ACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTGAAAG 81500 || || || || || | ||| || || | || || || || |||| || Sbjct 693914 ACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGGTGGACATTG--AG 693971 Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560 ||| ||||| || | | ||| || ||| || || || | ||| ||||| || || Sbjct 693972 ACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACC 694031 Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620 ||| ||||| || | || || |||| || ||| || || | || |||| | | Sbjct 694032 CTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCT--GGGCCTGCGGG 694089 Query 81621 G--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | || || ||||| || || |||| || || |||| | | | ||||||| || Sbjct 694090 GTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTG 694149 Query 81679 TAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAAC 81738 ||||| || ||||||| | | ||| || || || | ||| |||||||| | | Sbjct 694150 TAGGTCTCAATGACGCGCTCGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATC 694209 Query 81739 ATGTACTGGGG 81749 |||| |||||| Sbjct 694210 ATGTGCTGGGG 694220 >seq101 Length=737149 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 589762 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 589821 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | || || ||||| |||||||| |||||||| || ||| Sbjct 589822 GATACTATCGATAACGTCAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAG 589881 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| ||||| |||||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 589882 CAGCGCCTAATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGACTACAAC 589941 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | || | ||||| || ||||| Sbjct 589942 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTCCGTGGTGG 589988 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| ||||| | || || || || Sbjct 590218 ATGCAGATCTTCGTGAAGACTCTGACGGGAAAGACGATTACGTTGGAAGTGGAATCCTCG 590277 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||| | || |||||||| |||||||| || || || |||||| Sbjct 590278 GATACCATTGATAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCAG 590337 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||| ||||| |||||||||| || || || | ||||| || Sbjct 590338 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAAC 590397 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| |||||| || || ||| | || || |||||||| || Sbjct 590398 ATCCAGAAGGAGAGCACTCTCCACCTGGTCCTCCGCCTGCGCGGTGGCCA 590447 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || ||||| ||||| ||||| Sbjct 589990 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 590049 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||| | || || ||||| |||||||| || || || || ||| Sbjct 590050 GATACCATCGACAACGTGAAGTCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGATCAG 590109 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||||| || ||||| | ||||| || Sbjct 590110 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGTCGGACTACAAC 590169 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || | || || || ||||| Sbjct 590170 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTACGTGGTGG 590216 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| |||||||| || || ||||| ||||| |||| || | || | ||| | Sbjct 589558 ACCGGAAAGACTATCACCCTCGAGGTGGAGTCTTCGGATACTATCGACAACGTCAAGTCG 589617 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || ||||| ||||| || || || ||||| ||| Sbjct 589618 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTCGCTGGCAAG 589677 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | ||||| || | ||||| ||| | || ||||| ||||| |||||| Sbjct 589678 CAGCTTGAGGACGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCAT 589737 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || ||||| || Sbjct 589738 CTCGTCCTCCGCCTCCGCGGCGG 589760 >seq94 Length=69539 Score = 145 bits (160), Expect = 9e-30 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| ||||||||||| || |||||||| ||||| Sbjct 45639 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 45580 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| | || || |||||||||||||| || || || ||||| Sbjct 45579 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAA 45520 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||||||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 45519 CAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 45460 Query 27586 GTCCAAAAGG 27595 |||| |||| Sbjct 45459 ATCCAGAAGG 45450 >seq79 Length=2610973 Score = 140 bits (154), Expect = 4e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || ||||| |||||||| || |||||||| ||||| || | ||| Sbjct 579317 CTTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCAT 579376 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | || | ||| | || || |||||||||||||| ||||| || ||||| |||||||| Sbjct 579377 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCT 579436 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 ||||||||||| ||||| || ||||||| || || || | ||||| || |||| || Sbjct 579437 TATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 579496 Query 27594 GG 27595 || Sbjct 579497 GG 579498 >seq58 Length=769140 Score = 104 bits (114), Expect = 3e-17 Identities = 167/236 (71%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGG-GTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| | | || |||||| | || ||||| Sbjct 627992 AAGAAGGCCGACTGGGCCATCCGCTGGATCCAGGACAAGGAGTCGTCCTACGGCCAGCGC 628051 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || |||||| || || || || ||||| || | |||| || || ||| Sbjct 628052 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 628111 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||| | || ||||| ||| ||||||| || ||| | || || |||||||||||||| || Sbjct 628112 TGGGTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGT 628171 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCAAGGAC 64893 |||||||| || ||| || || || | || || ||| |||||||||| || Sbjct 628172 GACGAGGGTCTGCACACCGACTT--CGCCTGCCTGCTCTTCTCCCACCTCAAGCAC 628225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309451858960