Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq60 279 6e-70
seq101 158 1e-33
seq94 145 9e-30
seq79 140 4e-28
seq58 104 3e-17
>seq60
Length=1285956
Score = 279 bits (308), Expect = 6e-70
Identities = 1125/1751 (64%), Gaps = 51/1751 (3%)
Strand=Plus/Plus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| |||||||| || |||||||||| | ||||
Sbjct 692488 GCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGC 692547
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| ||| ||| | | ||||||| || |||| ||||||||||||||| |||||
Sbjct 692548 ATGCTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGAGACTGCGACTGG 692607
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211
|||||||| ||||| || || ||||| | | || | || | |||||||||
Sbjct 692608 TCAATGAAAGCACCACGGTCGGCTGCCATCTGCACAACAGTGCGCTGGGAAATTTCCCAG 692667
Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGT---CCAGATTTTGCACACTG 80265
|| || |||| |||| || | || | || ||| | | || || | |
Sbjct 692668 ACCGTCTTGTACAGAGCCTT--GATG-TCAGCAGGGATGCTGGCAATGTTCTGGATCGAG 692724
Query 80266 CCACCGTCCTTTACAATTTGATTTTTCAATTCAGAC-GTCCAGACACCAAGCTTGTGCAG 80324
|| ||| | || | || |||| | || | | ||| | ||||| | | ||
Sbjct 692725 CCGTTGTCGGCAATGATGCGGTTCTTCA-TCGAGTCCGACCACAGGCCAAGGTCGACGAG 692783
Query 80325 ATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATA 80384
||| | | | ||| | || |||||||| || || || ||| | ||
Sbjct 692784 ATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTA 692843
Query 80385 CAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGC 80444
| ||| | ||||| |||||||| ||||||||| || || ||||| | || || ||
Sbjct 692844 GATGTTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGC 692903
Query 80445 CGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCG 80504
|| ||||| || | | || ||| || || | ||||| |||||| | |||
Sbjct 692904 AGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCCTT 692963
Query 80505 CAAATCTGACCAAAAATCAACCCCAA----CGCTG----TGACC--CCACATGTCGTGCT 80554
|| || || || |||| || || |||| ||||||||| ||
Sbjct 692964 CAGG-CTATCC------CAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACT 693016
Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614
||| ||| |||| || | ||||| ||| | | || ||| | |||||| |||||
Sbjct 693017 GCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGG 693076
Query 80615 CCAGCTCACACG-ACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673
| | ||| |||| | || || || ||||| || ||| ||| |||| || ||||
Sbjct 693077 CGATCTC-CACGGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTC 693135
Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733
| | || |||| | | || || | || || || | ||| | ||||||||
Sbjct 693136 AGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCAGCCAGA 693195
Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAAT 80792
|||||||| || | |||| |||||||||||| |||| | | || ||||| || |
Sbjct 693196 CCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTT-GCTGTTGCGAGCCTCGGGCAC 693254
Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852
||||| ||| ||| |||| ||||||||||||||| ||| ||| || || ||
Sbjct 693255 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 693314
Query 80853 ATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906
|| || |||| |||||| | | ||| | ||| | || || || ||
Sbjct 693315 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACATAGGCGGGCAGAGCGAG 693374
Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966
||| ||||| |||||||| |||||||| || | | | |||| | ||| || |||||
Sbjct 693375 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCA 693434
Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026
|| || || ||| ||||||||||| |||||||| |||| ||| || |||
Sbjct 693435 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTC 693494
Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086
|||||| |||| | ||| | ||||||||| ||| | || ||||||||| | ||| |
Sbjct 693495 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAG 693554
Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146
|| | ||||||| |||||| || || ||| | ||||| |||| |
Sbjct 693555 CTTCTGAGCCTTGATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGC 693614
Query 81147 GTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205
||||||| | |||| | || || | || | ||||||||||| |||||||||||
Sbjct 693615 CTCGAACTCCTCGCCGTAGCAG-TCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAG 693673
Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265
||| |||| || ||||| ||| ||||||||| ||||||||||| || || ||
Sbjct 693674 TCCACTCGGCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGA 693733
Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325
||| || | | ||| ||||||| | || ||||| ||||| || | || || |
Sbjct 693734 ACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGGTTCTTGCGCAGATCCATGAACTCGA 693793
Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCAC 81382
| || || ||||| ||||| ||||| | ||| | | || ||| |||||
Sbjct 693794 ACACATCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCAC 693853
Query 81383 CCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTG 81442
|||||| || || || || || ||| || || || | ||| ||||||||||||| |
Sbjct 693854 CCTGGTCAACATAGCGCGCGGTGTTGTTGAACACTCGAAGCATGGGGATGATACCATTGG 693913
Query 81443 ACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTGAAAG 81500
|| || || || || | ||| || || | || || || || |||| ||
Sbjct 693914 ACGTGCCATTGGTTCCGGCAATATAAGAACCAGTAGCACGGATACGGTGGACATTG--AG 693971
Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560
||| ||||| || | | ||| || ||| || || || | ||| ||||| || ||
Sbjct 693972 ACCAATGCCGCCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACC 694031
Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620
||| ||||| || | || || |||| || ||| || || | || |||| | |
Sbjct 694032 CTCAATGCTGTCATCCTTTATATCAACCAGGAAGCACGACGAGAGCT--GGGCCTGCGGG 694089
Query 81621 G--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678
| || || ||||| || || |||| || || |||| | | | ||||||| ||
Sbjct 694090 GTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTG 694149
Query 81679 TAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAAC 81738
||||| || ||||||| | | ||| || || || | ||| |||||||| | |
Sbjct 694150 TAGGTCTCAATGACGCGCTCGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATC 694209
Query 81739 ATGTACTGGGG 81749
|||| ||||||
Sbjct 694210 ATGTGCTGGGG 694220
>seq101
Length=737149
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 589762 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 589821
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | ||| | || || ||||| |||||||| |||||||| || |||
Sbjct 589822 GATACTATCGATAACGTCAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAG 589881
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| ||||| |||||||| ||||| || ||||||| || ||||| | ||||| ||
Sbjct 589882 CAGCGCCTAATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGACTACAAC 589941
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || || | || | ||||| || |||||
Sbjct 589942 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTCCGTGGTGG 589988
Score = 154 bits (170), Expect = 2e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || || ||||| ||||| | || || || ||
Sbjct 590218 ATGCAGATCTTCGTGAAGACTCTGACGGGAAAGACGATTACGTTGGAAGTGGAATCCTCG 590277
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || ||||| | || |||||||| |||||||| || || || ||||||
Sbjct 590278 GATACCATTGATAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCAG 590337
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| ||||| ||||| |||||||||| || || || | ||||| ||
Sbjct 590338 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAAC 590397
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| |||||| || || ||| | || || |||||||| ||
Sbjct 590398 ATCCAGAAGGAGAGCACTCTCCACCTGGTCCTCCGCCTGCGCGGTGGCCA 590447
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || |||||||| || ||||| ||||| |||||
Sbjct 589990 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 590049
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || ||||| | || || ||||| |||||||| || || || || |||
Sbjct 590050 GATACCATCGACAACGTGAAGTCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGATCAG 590109
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| |||||||||| || ||||| | ||||| ||
Sbjct 590110 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGTCGGACTACAAC 590169
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || | || | || || || |||||
Sbjct 590170 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTACGTGGTGG 590216
Score = 132 bits (146), Expect = 5e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||| |||||||| || || ||||| ||||| |||| || | || | ||| |
Sbjct 589558 ACCGGAAAGACTATCACCCTCGAGGTGGAGTCTTCGGATACTATCGACAACGTCAAGTCG 589617
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| || || || ||||| ||||| || || || ||||| |||
Sbjct 589618 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTCGCTGGCAAG 589677
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||| | ||||| || | ||||| ||| | || ||||| ||||| ||||||
Sbjct 589678 CAGCTTGAGGACGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCAT 589737
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || || ||||| ||
Sbjct 589738 CTCGTCCTCCGCCTCCGCGGCGG 589760
>seq94
Length=69539
Score = 145 bits (160), Expect = 9e-30
Identities = 146/190 (77%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct 45639 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 45580
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | ||| | || || |||||||||||||| || || || |||||
Sbjct 45579 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAA 45520
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||||||||| ||||| || ||||||| || ||||| | ||||| ||
Sbjct 45519 CAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 45460
Query 27586 GTCCAAAAGG 27595
|||| ||||
Sbjct 45459 ATCCAGAAGG 45450
>seq79
Length=2610973
Score = 140 bits (154), Expect = 4e-28
Identities = 140/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| || ||||| |||||||| || |||||||| ||||| || | |||
Sbjct 579317 CTTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCAT 579376
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| || | ||| | || || |||||||||||||| ||||| || ||||| ||||||||
Sbjct 579377 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCT 579436
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
||||||||||| ||||| || ||||||| || || || | ||||| || |||| ||
Sbjct 579437 TATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 579496
Query 27594 GG 27595
||
Sbjct 579497 GG 579498
>seq58
Length=769140
Score = 104 bits (114), Expect = 3e-17
Identities = 167/236 (71%), Gaps = 7/236 (3%)
Strand=Plus/Plus
Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGG-GTCGTCGTTTGGTCAGCGT 64719
|| ||||| || ||||||||||| ||||| | | || |||||| | || |||||
Sbjct 627992 AAGAAGGCCGACTGGGCCATCCGCTGGATCCAGGACAAGGAGTCGTCCTACGGCCAGCGC 628051
Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779
|| | || |||||| || || || || ||||| || | |||| || || |||
Sbjct 628052 CTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTC 628111
Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839
||| | || ||||| ||| ||||||| || ||| | || || |||||||||||||| ||
Sbjct 628112 TGGGTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGT 628171
Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCAAGGAC 64893
|||||||| || ||| || || || | || || ||| |||||||||| ||
Sbjct 628172 GACGAGGGTCTGCACACCGACTT--CGCCTGCCTGCTCTTCTCCCACCTCAAGCAC 628225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309451858960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |