Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq53 93.3 4e-14 >seq53 Length=1555449 Score = 93.3 bits (102), Expect = 4e-14 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTT-CGCTCCCCCGATACTCCGCCCCAAAGT 6914 |||||| | |||||||| | |||||| | || ||| | || ||||| || ||||||| Sbjct 193970 CTGGTCGACGCCCTGTCCGGTATAGTCGGTTTTCGCGTCGACG-TACTCGGCACCAAAGT 194028 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA--CCC 6972 | | ||||||||| ||||| ||||||||||||||||| | ||||| | | | || Sbjct 194029 GGCGCCACTGGAAGCCGTACACCGGGCCCAAGTCGCCGACTTCCCG-GTGGCCCAGGCCG 194087 Query 6973 CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 ||| |||| || || || || || |||| ||||||||||||| || || Sbjct 194088 ACGC-TGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCC 194137 Score = 93.3 bits (102), Expect = 4e-14 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCC 34379 || || ||||||||||||| |||| || || || || || |||| ||| || | Sbjct 194137 GGCGTCAAGATCTGGGACGGCAACGGCTCGCGCGAGTTCCTCGACA-GCGTCGGCCTGGG 194079 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | | ||||| | ||||||||||||||||| ||||| ||||||||| | |||||||| | Sbjct 194078 CCAC-CGGGAAGTCGGCGACTTGGGCCCGGTGTACGGCTTCCAGTGGCGCCACTTTGGTG 194020 Query 34440 CGGAGTATCGGGGGAGCG-AAGCGGACTATTCGGGACAGGGAGCGGACCAG 34489 | ||||| || | ||| || | |||||| | |||||||| | |||||| Sbjct 194019 CCGAGTA-CGTCGACGCGAAAACCGACTATACCGGACAGGGCGTCGACCAG 193970 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 6515 CGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCA 6574 || ||||| || | ||||||| || | |||||||||| | ||| | ||| || Sbjct 193548 CGCGGCTCACGCTCCAGCTGGGTCTTCAAGGCATCGATGTGGTCGATGTACACATGGGCG 193607 Query 6575 TCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC-CACGACATGAGCGATCATGTA 6633 || |||| | ||| || || || ||||| | ||| || || || ||||||| Sbjct 193608 TCGCCCATCACATGAGTGAGGGTTCCGGGCACCAAGTCGCAC-ACGTGGGCAATCATGTG 193666 Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCG 6693 ||| || || ||||| || ||||||||||||||||| || | |||||||| | || || Sbjct 193667 CGTCAGAAGGGCGTAGCTGGCAATGTTGAACGGCACACCCAGACCCATGTCGCAGGACCG 193726 Query 6694 TTGATAGAGCTGGCAG 6709 || || ||||||||| Sbjct 193727 CTGGTACAGCTGGCAG 193742 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || || | |||||||| | || ||||||||||||||||| || Sbjct 193742 CTGCCAGCTGTACCAGCGGTCCTGCGACATGGGTCTGGGTGTGCCGTTCAACATTGCCAG 193683 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGG 34754 ||||| || || ||| ||||||| || || || ||| | ||||| || || || Sbjct 193682 CTACGCCCTTCTGACGCACATGATTGCCCACGT-GTGCGACTTGGTGCCCGGAACCCTCA 193624 Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814 ||| | |||| || || ||| | ||| | |||||||||| | || ||||| Sbjct 193623 CTCATGTGATGGGCGACGCCCATGTGTACATCGACCACATCGATGCCTTGAAGACCCAGC 193564 Query 34815 TGCAACGAGAGCCCCG 34830 || | || ||||| || Sbjct 193563 TGGAGCGTGAGCCGCG 193548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261654763760