Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq53 93.3 4e-14
>seq53
Length=1555449
Score = 93.3 bits (102), Expect = 4e-14
Identities = 127/171 (74%), Gaps = 6/171 (4%)
Strand=Plus/Plus
Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTT-CGCTCCCCCGATACTCCGCCCCAAAGT 6914
|||||| | |||||||| | |||||| | || ||| | || ||||| || |||||||
Sbjct 193970 CTGGTCGACGCCCTGTCCGGTATAGTCGGTTTTCGCGTCGACG-TACTCGGCACCAAAGT 194028
Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA--CCC 6972
| | ||||||||| ||||| ||||||||||||||||| | ||||| | | | ||
Sbjct 194029 GGCGCCACTGGAAGCCGTACACCGGGCCCAAGTCGCCGACTTCCCG-GTGGCCCAGGCCG 194087
Query 6973 CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023
||| |||| || || || || || |||| ||||||||||||| || ||
Sbjct 194088 ACGC-TGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCC 194137
Score = 93.3 bits (102), Expect = 4e-14
Identities = 127/171 (74%), Gaps = 6/171 (4%)
Strand=Plus/Minus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCC 34379
|| || ||||||||||||| |||| || || || || || |||| ||| || |
Sbjct 194137 GGCGTCAAGATCTGGGACGGCAACGGCTCGCGCGAGTTCCTCGACA-GCGTCGGCCTGGG 194079
Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439
| | ||||| | ||||||||||||||||| ||||| ||||||||| | |||||||| |
Sbjct 194078 CCAC-CGGGAAGTCGGCGACTTGGGCCCGGTGTACGGCTTCCAGTGGCGCCACTTTGGTG 194020
Query 34440 CGGAGTATCGGGGGAGCG-AAGCGGACTATTCGGGACAGGGAGCGGACCAG 34489
| ||||| || | ||| || | |||||| | |||||||| | ||||||
Sbjct 194019 CCGAGTA-CGTCGACGCGAAAACCGACTATACCGGACAGGGCGTCGACCAG 193970
Score = 86.0 bits (94), Expect = 6e-12
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 6515 CGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCA 6574
|| ||||| || | ||||||| || | |||||||||| | ||| | ||| ||
Sbjct 193548 CGCGGCTCACGCTCCAGCTGGGTCTTCAAGGCATCGATGTGGTCGATGTACACATGGGCG 193607
Query 6575 TCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC-CACGACATGAGCGATCATGTA 6633
|| |||| | ||| || || || ||||| | ||| || || || |||||||
Sbjct 193608 TCGCCCATCACATGAGTGAGGGTTCCGGGCACCAAGTCGCAC-ACGTGGGCAATCATGTG 193666
Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCG 6693
||| || || ||||| || ||||||||||||||||| || | |||||||| | || ||
Sbjct 193667 CGTCAGAAGGGCGTAGCTGGCAATGTTGAACGGCACACCCAGACCCATGTCGCAGGACCG 193726
Query 6694 TTGATAGAGCTGGCAG 6709
|| || |||||||||
Sbjct 193727 CTGGTACAGCTGGCAG 193742
Score = 86.0 bits (94), Expect = 6e-12
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
||||||||| || || || || | |||||||| | || ||||||||||||||||| ||
Sbjct 193742 CTGCCAGCTGTACCAGCGGTCCTGCGACATGGGTCTGGGTGTGCCGTTCAACATTGCCAG 193683
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGG 34754
||||| || || ||| ||||||| || || || ||| | ||||| || || ||
Sbjct 193682 CTACGCCCTTCTGACGCACATGATTGCCCACGT-GTGCGACTTGGTGCCCGGAACCCTCA 193624
Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814
||| | |||| || || ||| | ||| | |||||||||| | || |||||
Sbjct 193623 CTCATGTGATGGGCGACGCCCATGTGTACATCGACCACATCGATGCCTTGAAGACCCAGC 193564
Query 34815 TGCAACGAGAGCCCCG 34830
|| | || ||||| ||
Sbjct 193563 TGGAGCGTGAGCCGCG 193548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448261654763760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |