Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq101 158 3e-33 seq79 147 5e-30 seq94 136 9e-27 seq60 91.5 3e-13 >seq101 Length=737149 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| || || | ||||| | ||||| Sbjct 589973 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCC 589914 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || || || ||||||| || ||||| ||| Sbjct 589913 TCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTATCC 589854 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| || || || || |||||||| ||||| ||| Sbjct 589853 TGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACCTCGAGGGTGATGGTC 589794 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 589793 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||| ||| || |||||||| || || | ||| || | ||||| Sbjct 590429 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 590370 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||| || || | || ||||| ||| Sbjct 590369 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 590310 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| || ||||| || ||| ||| || || | || |||||| Sbjct 590309 TGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTC 590250 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| |||||||| || || | |||||| Sbjct 590249 TTTCCCGTCAGAGTCTTCACGAAGATCTGCAT 590218 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || |||||||| || |||| ||||| | ||||| Sbjct 590201 AGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 590142 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || || || || || | || ||||| ||| Sbjct 590141 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCC 590082 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||| || || || ||||| |||||||| ||| Sbjct 590081 TGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTC 590022 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 590021 TTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| |||||||| || || || || || || | || || | || || Sbjct 589745 AGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCGTCC 589686 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| |||||||| || || | || ||||||||| Sbjct 589685 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCC 589626 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| || || || || |||||||| ||||| ||| Sbjct 589625 TGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACCTCGAGGGTGATAGTC 589566 Query 211083 TTTCCCGTGA 211092 ||||| |||| Sbjct 589565 TTTCCGGTGA 589556 >seq79 Length=2610973 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || |||| ||||| || ||||||||||| || || ||| Sbjct 579496 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 579437 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || |||||||| || |||| || ||||||||||||||||| || ||||| ||| Sbjct 579436 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 579377 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || ||||| || ||||| |||||||| ||||||||||| || || Sbjct 579376 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318 >seq94 Length=69539 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | |||||| | ||||| || ||||||||||| || || || Sbjct 45452 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATC 45511 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| |||||||| || || | || ||||||||||||||||| || || || ||| Sbjct 45512 AGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 45571 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || || || ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 45572 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 45631 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 45632 ATCTGCAT 45639 >seq60 Length=1285956 Score = 91.5 bits (100), Expect = 3e-13 Identities = 191/285 (67%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||| ||||||||||| | | | | || |||||| |||||||| | || Sbjct 693462 GTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGT 693521 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||| | |||||| |||| ||| || ||| |||| ||| || || ||||| | Sbjct 693522 CTCGGTCTGAGCCTCGAGGATGGCATACCACAGCTTCTGAGCCTTGATGGTCTTGCGACC 693581 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || ||| ||||||||| | ||| || ||||||| ||| || ||| || | Sbjct 693582 GCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGC 693641 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332 |||||||| ||| |||||||| | ||| |||||| ||| | || || || || Sbjct 693642 AAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACACGCTT 693701 Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGC 178377 ||||||||| |||| | |||| | || ||| | |||||||| Sbjct 693702 CATGAAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGC 693746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150024732545