Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq101 89.7 3e-13 seq94 86.0 4e-12 >seq101 Length=737149 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| || || || || Sbjct 589762 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 589821 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | || || || || || || || | || || ||||| Sbjct 589822 GATACTATCGATAACGTCAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAG 589881 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| |||| ||||| ||||| || || || || | ||||| | || |||||| Sbjct 589882 CAGCGCCTAATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGACTACAAC 589941 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 589942 ATCCAGAAAGAGTCCAC 589958 >seq94 Length=69539 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| ||||| || || ||||| || || || || ||| || Sbjct 45639 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 45580 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | || | || || ||||| || || | || || || || Sbjct 45579 GATACTATCGACAATGTCAAGTC-GAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 45521 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || || | ||||| | ||| ||||| Sbjct 45520 ACAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAA 45461 Query 23790 CATACAAAA 23798 ||| || || Sbjct 45460 CATCCAGAA 45452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009052107564