Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq101 143 6e-29 seq18 120 7e-22 seq79 116 9e-21 seq94 109 1e-18 >seq101 Length=737149 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||||||| || || |||| ||||| |||| | ||| | ||||| Sbjct 590429 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 590370 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || || || || ||||| || || || || ||||| || Sbjct 590369 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 590310 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| || ||||| || |||| |||||| || ||||| |||||| Sbjct 590309 TGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTC 590250 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||| ||| || | ||| | ||||| Sbjct 590249 TTTCCCGTCAGAGTCTTCACGAAGATCTGCAT 590218 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || || ||||| || || || | |||||| |||| | ||| | || || Sbjct 589745 AGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCGTCC 589686 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || |||||||| || || || || |||||||| Sbjct 589685 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCC 589626 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| || || || | ||||| || | ||||| ||| Sbjct 589625 TGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACCTCGAGGGTGATAGTC 589566 Query 225682 TTGCCCGT 225689 || || || Sbjct 589565 TTTCCGGT 589558 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| || || |||| ||||| || | || || | ||||| Sbjct 590201 AGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 590142 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || || || || || || || ||||| || Sbjct 590141 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCC 590082 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| |||||||| || || | || || || | ||||| ||| Sbjct 590081 TGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTC 590022 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 590021 TTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990 >seq18 Length=9657 Score = 120 bits (132), Expect = 7e-22 Identities = 193/275 (70%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGG 7506 ||||||||||| | ||||| || | |||||||| |||||| | | || || Sbjct 3730 TATTTAATATTCGCCTTATTTTCAGGATTAATAGGTACAGCTTTTTCTGTTTTAATTAGA 3789 Query 7507 TTAGAATTAGCTGCTCCGGGTTCTCAAAT-AT-TGAGTGGTAATAGCCAACTTTACAACG 7564 ||||||||| || || ||| ||| | || | || ||| |||| | | || Sbjct 3790 TTAGAATTAAGTGGACCAGGTGTACAATTTATATCAG-----ATAACCAATTATTTAATA 3844 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 ||| |||| || ||||| | | ||||| || ||| | |||||||| | | | |||| Sbjct 3845 GTATAGTTACAGCACATGCTATATTAATGATATTTTTTATGGTTATGCCTGCTTTAATAG 3904 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | ||||| || |||| || | ||||||||||| || | ||| |||||||| ||||| | Sbjct 3905 GAGGTTTTGGTAATTTCTTAATGCCTTTAATGATAGGAGGTCCAGATATGGCATTTCCTA 3964 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | | || |||||||||||||||||| |||| ||| Sbjct 3965 GATTAAATAATATAAGTTTTTGATTATTACCACCT 3999 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/104 (79%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTG--ATAAAGGATAGGATCGCCTCCGCCT 370729 ||| || || ||||||||||||||||| ||||| ||||| |||||||| ||||| || Sbjct 4404 TTCTGGGTGTCCAAAAAATCAGAATAAGTGTTGGAATAAA--ATAGGATCTCCTCCACCA 4347 Query 370730 GATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | || || || || ||||||||||||||||| ||||| || Sbjct 4346 GCTGTTTCGAAGAATGATGTATTAAAATTTCTATCTGTTAATAC 4303 >seq79 Length=2610973 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | || ||| | ||||| || |||||||| ||||| || ||| Sbjct 579496 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 579437 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || |||||||| || ||||| || |||||||| |||||||| ||| || ||| Sbjct 579436 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 579377 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| || | ||||| || | ||||| ||||| || || | ||| || | ||| Sbjct 579376 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318 >seq94 Length=69539 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | ||||| || |||||||| ||||| || || Sbjct 45452 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATC 45511 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || |||||||| || || || || |||||||| |||||||| ||| ||| ||| Sbjct 45512 AGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 45571 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || || || |||| ||||| || | ||||| ||||||||||| | || || | ||| Sbjct 45572 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 45631 Query 225706 ACTTGCAT 225713 | ||||| Sbjct 45632 ATCTGCAT 45639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529167852302