Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq101 176 9e-39
seq94 150 4e-31
seq79 147 5e-30
seq58 98.7 2e-15
>seq101
Length=737149
Score = 176 bits (194), Expect = 9e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| |||||||| || ||||| || | ||||| || || |||||||||||||| | |
Sbjct 590444 CCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 590385
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || || || |||| || || ||||| ||
Sbjct 590384 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 590325
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||| || || ||||| | || ||| |||| || || ||||| | ||| |||
Sbjct 590324 ATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACT 590265
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || |||||||| ||||||| |||||| ||||| ||||||||
Sbjct 590264 TCCAACGTAATCGTCTTTCCCGTCAGAGTCTTCACGAAGATCTGCAT 590218
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| || | ||| ||||| ||||||||||||||||
Sbjct 589989 ACCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 589930
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || |||||||| | || || || || ||
Sbjct 589929 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGG 589870
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||| || |||||||| | || ||| |||||||||| ||||| | || ||
Sbjct 589869 AATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCAC 589810
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 589809 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | ||| || || |||||||||||||| |
Sbjct 590217 ACCACCACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 590158
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || || ||||| | ||| || || || ||
Sbjct 590157 CAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGG 590098
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||| || |||||||| | || ||| | ||||| || ||||| | |||||
Sbjct 590097 GATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGAC 590038
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || |||| ||||| ||||| ||||||||
Sbjct 590037 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || ||||| || || ||||| | ||| || || || || |||||||| |
Sbjct 589761 ACCGCCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGA 589702
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || || || ||||||| || |||||||| ||
Sbjct 589701 GAGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGG 589642
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | |||||||| ||||||| || ||
Sbjct 589641 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCAC 589582
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
||||| ||||| ||||| || ||
Sbjct 589581 CTCGAGGGTGATAGTCTTTCCGGT 589558
>seq94
Length=69539
Score = 150 bits (166), Expect = 4e-31
Identities = 146/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | ||| |||||||||||||| || || || || ||||| |||
Sbjct 45452 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATC 45511
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || |||||||| || || ||||||||||| |||||||| | || || | |||
Sbjct 45512 AGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 45571
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
||||| ||||| | || || || || ||||| ||||| ||||| | ||||| |||||
Sbjct 45572 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 45631
Query 283092 ATCTGCAT 283099
||||||||
Sbjct 45632 ATCTGCAT 45639
>seq79
Length=2610973
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||||| || || ||||||||||| || || || || ||||| ||
Sbjct 579496 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 579437
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| ||| |||||||| ||||| ||||||||||| |||||||| | || ||| | |||
Sbjct 579436 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 579377
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||||| || || || || ||||| ||||| || || | |||||| |||||
Sbjct 579376 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318
>seq58
Length=769140
Score = 98.7 bits (108), Expect = 2e-15
Identities = 171/249 (69%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 230162 AATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCG 230221
|||| |||| || | || || | || |||||||||| ||| ||| | || |||
Sbjct 628252 AATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGC 628311
Query 230222 TCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTAT 230281
|| | |||||||| || || ||| ||| || ||||| ||||| || || || |
Sbjct 628312 CCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 628371
Query 230282 TTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGA 230341
| || || || || ||||||| ||||| || ||| |||||||| | || |||||
Sbjct 628372 GCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATGGA 628431
Query 230342 GCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAG 230401
| ||| || || || || || ||||||||||| |||||||| |||| || || |
Sbjct 628432 GAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAGAA 628491
Query 230402 GCCCGGTGT 230410
| | |||||
Sbjct 628492 GGCTGGTGT 628500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046737416290982
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