Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq101 176 9e-39 seq94 150 4e-31 seq79 147 5e-30 seq58 98.7 2e-15 >seq101 Length=737149 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | ||||| || || |||||||||||||| | | Sbjct 590444 CCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 590385 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || || |||| || || ||||| || Sbjct 590384 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 590325 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| | || ||| |||| || || ||||| | ||| ||| Sbjct 590324 ATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACT 590265 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || |||||||| ||||||| |||||| ||||| |||||||| Sbjct 590264 TCCAACGTAATCGTCTTTCCCGTCAGAGTCTTCACGAAGATCTGCAT 590218 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || | ||| ||||| |||||||||||||||| Sbjct 589989 ACCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 589930 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || || || || Sbjct 589929 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGG 589870 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || |||||||| | || ||| |||||||||| ||||| | || || Sbjct 589869 AATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCAC 589810 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 589809 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || |||||||||||||| | Sbjct 590217 ACCACCACGTAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 590158 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||| | ||| || || || || Sbjct 590157 CAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGG 590098 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || |||||||| | || ||| | ||||| || ||||| | ||||| Sbjct 590097 GATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGAC 590038 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 590037 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || ||||| || || ||||| | ||| || || || || |||||||| | Sbjct 589761 ACCGCCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGA 589702 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || || || ||||||| || |||||||| || Sbjct 589701 GAGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGG 589642 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | |||||||| ||||||| || || Sbjct 589641 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCAC 589582 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 589581 CTCGAGGGTGATAGTCTTTCCGGT 589558 >seq94 Length=69539 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||| |||||||||||||| || || || || ||||| ||| Sbjct 45452 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATC 45511 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || |||||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 45512 AGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 45571 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 ||||| ||||| | || || || || ||||| ||||| ||||| | ||||| ||||| Sbjct 45572 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 45631 Query 283092 ATCTGCAT 283099 |||||||| Sbjct 45632 ATCTGCAT 45639 >seq79 Length=2610973 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| || || ||||||||||| || || || || ||||| || Sbjct 579496 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 579437 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| |||||||| ||||| ||||||||||| |||||||| | || ||| | ||| Sbjct 579436 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 579377 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||||| || || || || ||||| ||||| || || | |||||| ||||| Sbjct 579376 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 579318 >seq58 Length=769140 Score = 98.7 bits (108), Expect = 2e-15 Identities = 171/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 230162 AATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCG 230221 |||| |||| || | || || | || |||||||||| ||| ||| | || ||| Sbjct 628252 AATCATCACCGATGCCGTGGCCATCGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGC 628311 Query 230222 TCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTAT 230281 || | |||||||| || || ||| ||| || ||||| ||||| || || || | Sbjct 628312 CCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 628371 Query 230282 TTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGA 230341 | || || || || ||||||| ||||| || ||| |||||||| | || ||||| Sbjct 628372 GCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGGCCACCAACCCCTTTGACTTCATGGA 628431 Query 230342 GCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAG 230401 | ||| || || || || || ||||||||||| |||||||| |||| || || | Sbjct 628432 GAACATCTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAGAA 628491 Query 230402 GCCCGGTGT 230410 | | ||||| Sbjct 628492 GGCTGGTGT 628500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737416290982