Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq101 161 7e-35 seq94 109 4e-19 seq79 86.0 5e-12 >seq101 Length=737149 Score = 161 bits (178), Expect = 7e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||||||||||| ||||||||||| |||| || ||| | || || Sbjct 590426 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 590367 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || |||| |||||||| || | || | || ||||| ||| Sbjct 590366 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGA 590307 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | ||||| || | ||||||||| |||| ||||||||||||| Sbjct 590306 ATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTCTTT 590247 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||||||||||||| ||||| Sbjct 590246 CCCGTCAGAGTCTTCACGAAGATCTGCAT 590218 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| ||| || ||||||||||| || | || ||| | || || Sbjct 589971 CACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTC 589912 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||| | ||||||||||| | ||| | || ||||| ||| Sbjct 589911 AAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTATCCTG 589852 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | || || || | || |||||||| | || || ||||| Sbjct 589851 GATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACCTCGAGGGTGATGGTCTT 589792 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 589791 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| |||||| ||||||||||| || | || ||| | || || Sbjct 590199 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 590140 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||||||||| | || | || ||||| ||| Sbjct 590139 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCCTG 590080 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||||| | | ||||| || | || || ||||||| || || ||||| Sbjct 590079 GATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTCTT 590020 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| ||||| || ||||| Sbjct 590019 GCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990 >seq94 Length=69539 Score = 109 bits (120), Expect = 4e-19 Identities = 147/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 44137 AAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTT 44196 ||||| || |||| ||||||||||| |||| || ||| | || || |||||||| Sbjct 45439 AAGCGGGCGAACCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTT 45498 Query 44197 CCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTG 44256 || ||||| |||| ||||| || || | || | || ||||| ||| |||||| Sbjct 45499 GCCAGCAAAAATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGA 45558 Query 44257 CTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTG 44314 ||| || ||| | || || || | ||| |||||||| | || || ||||| ||||| Sbjct 45559 CTTGACATTGT--CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTA 45616 Query 44315 AGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| || ||||| Sbjct 45617 AGGGTCTTCACGAAAATCTGCAT 45639 >seq79 Length=2610973 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | || || | || || |||||||| || ||||| | Sbjct 579498 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 579439 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 | | |||||| || || | || | || ||||| ||| ||||| ||| | | Sbjct 579438 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 579379 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | |||||||| | || |||||||| | || || |||||||| ||||| ||||| |||| Sbjct 579378 CGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGA 579319 Query 44328 AG 44329 || Sbjct 579318 AG 579317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989816478061