Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11]
133 sequences; 35,489,142 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq101 161 7e-35
seq94 109 4e-19
seq79 86.0 5e-12
>seq101
Length=737149
Score = 161 bits (178), Expect = 7e-35
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||||||||||| ||||||||||| |||| || ||| | || ||
Sbjct 590426 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 590367
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || || |||| |||||||| || | || | || ||||| |||
Sbjct 590366 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGA 590307
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||||| | | ||||| || | ||||||||| |||| |||||||||||||
Sbjct 590306 ATCTTCGACTTCACGTTATCAATGGTATCCGAGGATTCCACTTCCAACGTAATCGTCTTT 590247
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || |||||||||||||| |||||
Sbjct 590246 CCCGTCAGAGTCTTCACGAAGATCTGCAT 590218
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || ||| ||| || ||||||||||| || | || ||| | || ||
Sbjct 589971 CACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTC 589912
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || |||||||| | ||||||||||| | ||| | || ||||| |||
Sbjct 589911 AAGCTGCTTGCCAGCAAAGATTAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTATCCTG 589852
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| | | | || || || | || |||||||| | || || |||||
Sbjct 589851 GATCTTCGACTTGACGTTATCGATAGTATCCGACGACTCCACCTCGAGGGTGATGGTCTT 589792
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| |||||||| |||||
Sbjct 589791 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 589762
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || ||| |||||| ||||||||||| || | || ||| | || ||
Sbjct 590199 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 590140
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||| | |||||||||||| | || | || ||||| |||
Sbjct 590139 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTATCCTG 590080
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||||| | | ||||| || | || || ||||||| || || |||||
Sbjct 590079 GATCTTCGACTTCACGTTGTCGATGGTATCCGACGACTCGACCTCCAGAGTGATGGTCTT 590020
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||||||| ||||| || |||||
Sbjct 590019 GCCAGTCAGGGTCTTGACGAAAATCTGCAT 589990
>seq94
Length=69539
Score = 109 bits (120), Expect = 4e-19
Identities = 147/203 (72%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 44137 AAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTT 44196
||||| || |||| ||||||||||| |||| || ||| | || || ||||||||
Sbjct 45439 AAGCGGGCGAACCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTT 45498
Query 44197 CCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTG 44256
|| ||||| |||| ||||| || || | || | || ||||| ||| ||||||
Sbjct 45499 GCCAGCAAAAATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGA 45558
Query 44257 CTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTG 44314
||| || ||| | || || || | ||| |||||||| | || || ||||| |||||
Sbjct 45559 CTTGACATTGT--CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTA 45616
Query 44315 AGGGTCTTCACGAAGATTTGCAT 44337
|||||||||||||| || |||||
Sbjct 45617 AGGGTCTTCACGAAAATCTGCAT 45639
>seq79
Length=2610973
Score = 86.0 bits (94), Expect = 5e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| || | || || | || || |||||||| || ||||| |
Sbjct 579498 CCTTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAA 579439
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267
| | |||||| || || | || | || ||||| ||| ||||| ||| | |
Sbjct 579438 TAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 579379
Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327
| |||||||| | || |||||||| | || || |||||||| ||||| ||||| ||||
Sbjct 579378 CGATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGA 579319
Query 44328 AG 44329
||
Sbjct 579318 AG 579317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359989816478061
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |