Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knufia_20petricola_20[genbank_20GCA_5F002225475.1_202017-07-25] 510 sequences; 27,731,162 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq144 134 2e-26 seq130 86.0 7e-12 >seq144 Length=62325 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| ||| | || |||| ||||| || |||||| || || ||||| || | Sbjct 23952 CCACCTCGTAATCTCAGAACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCTGAG 23893 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | |||| || || ||||| |||||||| || |||||||| ||||||| || Sbjct 23892 AGTGTTCTGCCGTCCTCGAGTTGCTTGCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGA 23833 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||| |||||| |||| | | | |||||| ||||| || Sbjct 23832 ATGCCTTCCTTGTCTTGGATTTTCGACTTGACATTGTCGATTGTGTCGGAGGATTCAACT 23773 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 23772 TCGAGCGTGATGGTTTTGCCTGTTAGAGTCTTGACAAAGATTTGCAT 23726 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || ||| || || || ||||| || || || || | Sbjct 23485 ACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTGCGACC 23426 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| ||||||||||| || || || || ||||||| || | || |||||| Sbjct 23425 ATCTTCAAGCTGTTTACCAGCGAAAATAAGACGTTGTTGGTCGGGGGGAATGCCCTCCTT 23366 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | | | | |||||||| || || || || | ||||| Sbjct 23365 GTCCTGGATCTTGCTCTTTACATTATCGATGGTGTCGCTAGACTCGACCTCAAGGGTGAT 23306 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| ||||| || || ||||| || ||||| ||||| || Sbjct 23305 GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 23267 Score = 89.7 bits (98), Expect = 6e-13 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || || |||||||| | || | |||| || | ||||||||||| ||||| ||||| Sbjct 24186 TACTGACCTCCTCTCAGTCGGAGAACCAGGTGTAGCGTGCTCTCCTTCTGAATGTTGTAG 24127 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | ||||| || | || || | ||||||||||| || || | |||||| || || Sbjct 24126 TCGGAAAGAGTACGACCATCCTCCAATTGCTTACCAGCAAAGATTAATCGCTGTTGATCC 24067 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCG 43128 | || | | |||||||| | ||| | || | |||| ||| | | | ||||| | Sbjct 24066 GGGGGAATACCCTCCTTGT-CTTGAATCTTGGACTTGA-CGTTGTCAATGGTGTCTGAAG 24009 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || | || ||||| || || || || ||||| ||||| || ||||| Sbjct 24008 ATTCGACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCAT 23954 >seq130 Length=70983 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 37990 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGA 38049 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||||| || | | |||||||||| ||| || |||| | Sbjct 38050 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 38109 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 38110 CGATGGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTAACGA 38169 Query 43174 AG 43175 || Sbjct 38170 AG 38171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813954662800