Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knufia_20petricola_20[genbank_20GCA_5F002225475.1_202017-07-25] 510 sequences; 27,731,162 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq144 86.0 6e-12 seq53 84.2 2e-11 >seq144 Length=62325 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || |||||||| ||||||| |||| ||||| || ||||||||| Sbjct 23466 GTTGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCAAGCTGTTTACCA 23407 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || | || |||||||| || ||||| || ||||| || ||||| || || ||| Sbjct 23406 GCGAAAATAAGACGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTT 23347 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || |||| || | |||||||| || | || Sbjct 23346 ACATTATCGATGGTGTCGCTAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 23287 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 23286 TTGACGAAGATCTGCAT 23270 >seq53 Length=169705 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || ||||||| |||||| | || || | ||||| || | ||||| || |||||||| Sbjct 76321 GAGGCCGTCGGCATCGAGCAGGAATTCCTTACGGAAGCCCTCCCCGTCGCTCTGTTGGGC 76262 Query 50692 ATGAACGCAGA-CATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCA 50750 |||||| || | | | ||| |||| || ||||| || || ||| || ||||| | || Sbjct 76261 ATGAAC-CATACCCTCATGAAGCAGTATATCGAGTTCGTCGCCGACCGACTGTTGGT-CA 76204 Query 50751 GC-TGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATAT 50809 || |||| | || || ||||| || || ||||| || || ||| | ||||| | Sbjct 76203 GCATGGGCAATCCCAAGTACTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATCT 76144 Query 50810 CGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50856 | ||| ||||| || ||||| ||||| | || || || || ||| Sbjct 76143 CCCTGGCCGGCAAGACTAACTTCTTCGAGAAGCGCGTCGGTGATTAC 76097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011167783200