Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knufia_20petricola_20[genbank_20GCA_5F002225475.1_202017-07-25] 510 sequences; 27,731,162 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq53 174 2e-38 seq52 111 2e-19 >seq53 Length=169705 Score = 174 bits (192), Expect = 2e-38 Identities = 386/572 (67%), Gaps = 8/572 (1%) Strand=Plus/Minus Query 125005 TCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCG 125064 ||||||| || || || ||| | ||||| | ||||| || || || ||||| | | Sbjct 76953 TCAGGTACCACGAGATCTGGACAGCCTACAAGAGAGCTCAAGCTTCGTTCTGGACTGCTG 76894 Query 125065 AAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAG 125123 | |||||||| |||||||| ||||| |||| ||| | | | | | || || ||| Sbjct 76893 AGGAGGTCGACCTGTCCAAAGACCTCCACGACTGGCACAACAAGCTCAAC-GACGATGAA 76835 Query 125124 CGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGAC 125183 || | || || || ||| | | |||||||| || | ||| || || ||||||||||| Sbjct 76834 CGTTATTTCATCTCCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAG 76775 Query 125184 AATCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTAC 125240 || || | || |||||| || | ||| |||| || | ||| ||||| || Sbjct 76774 AACCTCCTCGAGCGCTTCTCTGGTGAAGT--CCAAGTTCCCGAAGC-TCGATGCTTCTAT 76718 Query 125241 GGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATG 125300 || ||||| |||||||| |||||| | ||||| || |||||| || ||||||| Sbjct 76717 GGCTTCCAGATCATGATGGAGAACATCCACTCCGAGATGTACAGCTTGCTCATTGACACA 76658 Query 125301 TACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCT 125360 ||| | || | | | || || || || |||| |||||||| | || | | Sbjct 76657 TACGTGAAGGAGCAAAAGCAGAAGCAGTACCTGTTCGACGCTATCGACACAATCCCATGT 76598 Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || | || ||||| |||||| |||| |||||| ||| | || | | ||| Sbjct 76597 ATCAGGAAGAAGGCCGAATGGGCTCTTCGATGGATCTCAGACAAGGAGAGCACATTCGCT 76538 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | || || || || || ||||| ||||| || ||||| || || ||||| || Sbjct 76537 CAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATTTTCTTCTCCGGCTCGTTTGCCTCC 76478 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| |||||||||||||| || |||||||| || || || | ||||| | || Sbjct 76477 ATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTTACCTTCTCCAACGAACTCATC 76418 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || |||||||||||| | ||| |||||| || Sbjct 76417 TCCCGAGACGAGGGCATGCACACTGACTTCGC 76386 >seq52 Length=173047 Score = 111 bits (122), Expect = 2e-19 Identities = 328/499 (66%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || || | || ||||| | ||| |||| | || |||||||| || || Sbjct 71891 CAAGGTGGTAACAAGAGACCTGGCGCCTTCGCCATCTATCTTGAGCCTTGGCATGCCGAT 71950 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || || | | || || || || || |||| |||| | || Sbjct 71951 GTATTTGAGTTCATGAACCTCCGAAAGAATCACGGAAAGGAGGAGGTTAGAGCTCGTGAT 72010 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 ||||| ||||| || ||| | || ||||||||||||||||| || || || | Sbjct 72011 TTGTTCTATGCTCTGTGGATCCCCGATTTGTTCATGAAGCGAGTGGAGAAGAACCAAG-- 72068 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || | ||||| | | | || ||||| || || |||| ||||| ||| Sbjct 72069 -ACTGGACTCTTTTCTGCCCGAATGAGGCGCCTGGTCTATCAGACTGCTATGGCGACGAG 72127 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATA-CGTGAGACGAGTCGATGC 97171 || || || | | | |||||| || || ||| || | || | | | || Sbjct 72128 TTCGAAGCACTTTTCGAGAAATACGAGAGGGAAGGTCGAGGTCGACAAACTA-TGAAGGC 72186 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 || |||| |||||| | || ||| || || || |||||| || | |||| ||| | Sbjct 72187 AC-AGAAGCTGTGGTATGCTATCTTGGAAGCACAAACAGAGACGGGCAACCCGTTCATGC 72245 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 | ||||||||| | || | || |||||| || | |||||||||||| || Sbjct 72246 TTTACAAGGATGCTTGCAACAGAAAGTCCAACCAGAAGAACCTTGGCACCATCAAGTCCT 72305 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTC 97350 | || ||||||| || ||||| |||||| | |||| |||||| || || ||| || Sbjct 72306 CGAACTTGTGCACTGAGATTGTCGAGTACACTGCTCCTGACGAGGTTGCTGTCTGCAATC 72365 Query 97351 TGGCATCGGTCAATCTGCC 97369 |||| |||||| |||||| Sbjct 72366 TGGCTTCGGTCGCTCTGCC 72384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054475747600