Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knufia_20petricola_20[genbank_20GCA_5F002225475.1_202017-07-25] 510 sequences; 27,731,162 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq52 167 3e-36 seq53 120 4e-22 >seq52 Length=173047 Score = 167 bits (184), Expect = 3e-36 Identities = 633/976 (65%), Gaps = 22/976 (2%) Strand=Plus/Minus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 || || || |||||||| || || || ||||| | || | | | || | | |||||| Sbjct 72378 GCGACCGAAGCCAGATTGCAGACAGCAACCTCGTCAGGAGCAGTGTACTCGACAATCTCA 72319 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||||| | || ||||||| || || | || | || || |||| |||| || Sbjct 72318 GTGCACAAGTTCGAGGACTTGATGGTGCCAAGGTTCTTCTGGTTGGACTTTCTGTTGCAA 72259 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071 |||||||| ||||| ||||| || | || || || | || | ||| | || || | | Sbjct 72258 GCATCCTTGTAAAGCATGAACGGGTTGCCCGTCTCTGTTTGTGCTTCCAAGATAGCATAC 72199 Query 63072 CAGACGACTC-GAGCCTTTATTATAGATTTGT--ATCTC--CTTTCTCTTTCGTATAGTG 63126 || | | || | ||||| || || ||||| | ||| | ||| || |||||| | Sbjct 72198 CACA-GCTTCTGTGCCTTCAT---AG-TTTGTCGACCTCGACCTTCCCTCTCGTATT-TC 72145 Query 63127 TATACAATCG-TTCGAACTCGTCTCCCCAAACATTGTCCAAT---CCAGGACATTCATCC 63182 | | || | |||||||||||| || | || ||| || ||||| |||| | Sbjct 72144 TCGAAAAGTGCTTCGAACTCGTCGCCATAG-CA--GTCTGATAGACCAGGCGCCTCATTC 72088 Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || || | | | ||| ||| || | || |||||| ||||| || | ||| || ||| Sbjct 72087 GGGCAGAAAAGAGTCCAGTCTTGGTTCTTCTCCACTCGCTTCATGAACAAATCGGGGATC 72028 Query 63243 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 || ||||| ||| || | ||| | | |||| ||||| ||||| ||||||| || Sbjct 72027 CACAGAGC-ATAGAACAAATCACGAGCTCTAACCTCCTCCTTTCCGTGATTCTTTCGGAG 71969 Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 | | |||| | | | ||| | |||||| || || | || ||||| | | ||||| Sbjct 71968 GTTCATGAACTCAAATACATCGGCATGCCAAGGCTCAAGATAGATGGCGAAGGCGCCAGG 71909 Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 | ||||| || || ||||| | || | |||||||| | | | || || | ||| || Sbjct 71908 TCTCTTGTTACCACCTTGATCGACATAGCGGGCGGTGTTGTCAAAGACCCTAAGCATGGG 71849 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481 | | |||||| ||| |||| || || |||| || || || | || || || || Sbjct 71848 TACGAGACCGTTGGATGTACCGTTAGTGCCGGCAATGTATGAGCCGGTAGCTCGGATTTT 71789 Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 || ||||| || || || || |||| ||||| | || || || | || Sbjct 71788 GTGAACATTCAGACCAATGCCACCAGCATTTTTTGAGATCATAGCACAAGTCTTGAGAGT 71729 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601 ||| |||||||||||||| || || |||||| | || || || |||||||| Sbjct 71728 GTCGTAGATACCCTCTATTGAGTCTTCCTTCATGTCGATGAGGAAGCAAGATGACATTTG 71669 Query 63602 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63661 | || || || || || | || || || || || |||||| |||| || Sbjct 71668 TGCTTGTGGTGTGCCTGCGTTGAACAGAGTGGGCGAGGCATGTGTAAACATCTTTTGGGA 71609 Query 63662 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63721 | || ||||| ||||| || || || || || | ||||| ||||| | ||| Sbjct 71608 CATGAGGTTGTAGGTCTCGATGGCCTTTTCAATGTCGTCTCCGTGAATGCCTACAGAGAC 71549 Query 63722 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT-TTTCAACAAGTAGG 63780 |||||| | ||||||||| || || || || ||| | | || ||||| | ||| | Sbjct 71548 ACGCATAAGCATGTGCTGGGGCCTCTCCCAGA-CTTTTCCGTCATATTTCAGGAGGTATG 71490 Query 63781 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63840 || | ||||| || || || ||||| || | ||| ||||| || ||||| | || Sbjct 71489 ATCTCTCCAAGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTAGACGATGG 71430 Query 63841 CCGAGTTGAGTTTATC 63856 | |||||||| | ||| Sbjct 71429 CAGAGTTGAGCTCATC 71414 >seq53 Length=169705 Score = 120 bits (132), Expect = 4e-22 Identities = 249/369 (67%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 |||||||| || ||||| |||||||||| || ||||||||||| || || || Sbjct 76383 CATGCGAAGTCAGTGTGCATGCCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAGGTAAGA 76442 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || ||||| || ||||| || || || || || ||||| Sbjct 76443 CCTGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCGGAGAAGAAA 76502 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC----TGTCATG 33479 || || || || ||||||||||| | || | || | || || | |||| Sbjct 76503 ATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGC-GAATGTGCTCTCCTTGTCTGA 76561 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| ||||||| ||||||||||| | | ||| || || || || || || | Sbjct 76562 GATCCATCGAAGAGCCCATTCGGCCTTCTTCCTGATACATGGGATTGTGTCGATAGCGTC 76621 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 || || || | || | || || || || || || || || | | || ||||| Sbjct 76622 GAACAGGTACTGCTTCTGCTTTTGCTCCTTCACGTATGTGTCAATGAGCAAGCTGTACAT 76681 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || || || ||||| || || ||||| || || ||||| |||| ||| |||| || Sbjct 76682 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCATCGAGCTTCGGGAAC 76741 Query 33660 CTGTACTTC 33668 || ||||| Sbjct 76742 TTGGACTTC 76750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943228711600