Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knufia_20petricola_20[genbank_20GCA_5F002225475.1_202017-07-25] 510 sequences; 27,731,162 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq272 140 2e-28 seq14 118 7e-22 seq144 96.9 2e-15 >seq272 Length=8069 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1820 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1879 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1880 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1914 >seq14 Length=323116 Score = 118 bits (130), Expect = 7e-22 Identities = 209/305 (69%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| || ||| | |||||||||||||| ||| ||| ||| |||| | || || | Sbjct 217316 ATGTCGCCGACCCCTTCTACCGCTACAAGATGGAGCGTATCCAGTCCAAAATTGAAGGCA 217257 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| || ||||| || |||||| | | ||| | ||| ||||| || | |||| || Sbjct 217256 AGGGCAATGGTATCAAGACCGTCGTCGCCAATCTTCCTTCGGTCGCCCAGTCTCTCGCAC 217197 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 | ||| || ||||| | || || || || | ||||||||| ||||| || | Sbjct 217196 GTCCTCCCTCCTACGTTATCAAGTACTTTGGCTTCGAACTTGGTGCTCAAACCAACACAA 217137 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426 | | ||| | || || | ||| | |||||| | || | || | ||| || ||||| | Sbjct 217136 ACCCGAAAGATGACCGATGGATCATCAACGGAGCACACCAGTCAGACAAACTCCAGGAAT 217077 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 |||||||| || || || |||||| || || ||| ||| | ||||| ||||||| Sbjct 217076 CCCTTGACGGTTTCATCAACAGGTTTGTCCTCTGCAAGGACTGCAAGAACCCCGAGACCG 217017 Query 6487 AGCTT 6491 || || Sbjct 217016 AGTTT 217012 >seq144 Length=62325 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||||| || | |||| || || ||||||||||| ||||| ||||| || || Sbjct 24181 ACCTCCTCTCAGTCGGAGAACCAGGTGTAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGA 24122 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || || ||||| || || ||||| |||| || |||||||| | ||| Sbjct 24121 AAGAGTACGACCATCCTCCAATTGCTTACCAGCAAAGATTAATCGCTGTTGATCCGGGGG 24062 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || ||||| ||| || ||| || || | | || ||| | ||| || Sbjct 24061 AATACCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGAAGATTCGAC 24002 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || ||||| || || || || | || || || || |||||||| Sbjct 24001 TTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCAT 23954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945118093810