Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knufia_20petricola_20[genbank_20GCA_5F002225475.1_202017-07-25] 510 sequences; 27,731,162 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq16 113 9e-20 seq53 104 5e-17 seq56 91.5 3e-13 >seq16 Length=300211 Score = 113 bits (124), Expect = 9e-20 Identities = 173/243 (71%), Gaps = 9/243 (4%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || || ||||||||||||||| |||| | |||| || || | || Sbjct 35272 GTCGGCTCTCTATCTGGCGGTTGGAAGATGAAGTTGGCTTTGGCTCGAGCAATGTTGATG 35213 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | |||||||| | |||| || ||||| || ||||| | ||| ||||||| ||| Sbjct 35212 AGAGCCGATGTTTTCTTGCTGGACGAGCCGACTAACCATCTCGACGTTGCCAACGTCGCC 35153 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATG---TTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | || | | | |||| | | ||||| || || |||||| Sbjct 35152 TGGCTCGAGAACTACCT--CAAGAC-GCATAATGAGATCACCTCCCTGATCGTGTCTCAC 35096 Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAG 279932 ||||||| ||| |||| | ||| ||| | | |||| |||||| ||||| || |||| Sbjct 35095 GACTCTGCTTTCTTAGACGACGTCTGCACGGACATCTATCACTACGAGCAGAA---GAAG 35039 Query 279933 CTC 279935 ||| Sbjct 35038 CTC 35036 >seq53 Length=169705 Score = 104 bits (114), Expect = 5e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| |||| |||||| |||| ||||| ||||||||||||||| ||||| || Sbjct 76116 TCGAAGAAGTTAGTCTTGCCGGCCAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTA 76175 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCT-ACGAAGATGCGGTCTGCCACAAACTCCAG 251681 || ||||| | |||||||| ||| | |||| || || | ||||| || || ||||| | Sbjct 76176 GCCTTGTAGTACTTGGGATTGCCCA-TGCTGACCAACAGTCGGTCGGCGACGAACTCGAT 76234 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGA 251740 |||||| ||| || | ||||||||| | || | |||| || | || || | Sbjct 76235 ATACTGCTTCATGAGGGTATGGTTCATGCCCAACAGAGCGAC-GGGGAGGGCTTCCGTAA 76293 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTC 251768 |||||||| ||| || | || ||||| Sbjct 76294 GGAATTCCTGCTCGATGCCGACGGCCTC 76321 >seq56 Length=160830 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| || ||||| | | |||||||||| || |||||||| || || | Sbjct 66731 CCAACTTCGGTCTCGATGCCGAGCTGATCTCTCACTCTCGTATGCGCGGTCTCTCAGGTG 66672 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | ||| | | || || | |||||||| |||||| ||||||| Sbjct 66671 GACAGCGTGTCAAGGTCGTCCTTGCTGCCTGCAC-GTGGCAACGACCTCACTTGATCGTC 66613 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||||||||||| |||||||| || ||||| || Sbjct 66612 CTCGACGAGCCAACCAACTACCTTGACCGAGA 66581 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| ||||| || ||||| ||||| || |||||||| || |||| ||| || Sbjct 67287 TCCCGTATTGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCTACGCTGGTCAACGTCTTG 67228 Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCT 280280 ||||| ||| | |||||| || || | |||| ||||| || || || Sbjct 67227 ACTGGTGAGCTCATCCCCACTGGTGGTGAGGTCTACCAGCACGAGAACATCCGAATTGCC 67168 Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340 ||| || |||||||| ||| |||||||| ||||| || |||| ||| || | Sbjct 67167 TACATCAAGCAGCACGCATTCGCTCACATCGATAACCATCTCGACAAGACCCCATCTGAG 67108 Query 280341 TACATTCAGTGGCG 280354 |||||||||||||| Sbjct 67107 TACATTCAGTGGCG 67094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830083728910